Detailed information on CNT30671641


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554357Setaria viridisOryza glaberrima29.3628.6489.06128forward
CNT30252593Setaria viridisAvena sativa28.6722.4885.6125forward
CNT30658973Setaria viridisTriticum dicoccoides21.3318.4288.1793forward
CNT30680120Setaria viridisTriticum urartu59.453.1883.4259forward
CNT30370667Setaria viridisOryza glumipatula32.3427.4388.65141forward
CNT30102728Setaria viridisOryza rufipogon29.3625.389.06128forward
CNT30117104Setaria viridisOryza nivara32.5723.0988.73142forward
CNT30551372Setaria viridisOryza brachyantha43.1239.2585.64188forward

Expression of CNT30671641

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MIQGEEVLERRRQPGLRGLRDVRQHQRRCHGRRGQPGRRLLLHGRRRPDGHPGGRPRPQLQGLERRRRLPEPGDGQRRRDGGQGRGGHGEDR*

>peptide 2 (68 aa)
MAAAVSPAAAFSFMDADARTAILAAGLALSCRGWNDDVGFLSPATDSGAATADRDAVAMARIDEIRGAE

>peptide 3 (32 aa)
LIELYTMHVSKHQSHIQKANDDLTRTPYHKHV*

Sequence

>CNT30671641
TTAATTGAACTATACACCATGCATGTATCAAAGCATCAATCACATATACAAAAAGCAAACGATGATTTAACTCGAACTCCGTATCATAAACATGTTTGAA
CATTCTCCAAAACAAGATAGCAAGATTACACCACTCGATACATGATACAGGGGGAGGAAGTTCTTGAGCGACGGCGTCAGCCCGGACTGCGCGGCCTCCG
CGACGTCAGGCAGCACCAGCGCCGCTGCCATGGCCGCCGCGGTCAGCCCGGCCGCCGCCTTCTCCTTCATGGACGCCGACGCCCGGACGGCCATCCTGGC
GGCCGGCCTCGCCCTCAGCTGCAGGGGCTGGAACGACGACGTCGGCTTCCTGAGCCCGGCGACGGACAGCGGCGCCGCGACGGCGGACAGGGACGCGGTG
GCCATGGCGAGGATCGATGAGATTCGTGGCGCGGAG