Detailed information on CNT30671430


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41806|PSBQ2_MAIZE, E-value = 7e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694735Setaria viridisOryza sativa38.112.1290.6296forward
CNT30520717Setaria viridisSetaria italica59.1320.4191.95149forward
CNT30179895Setaria viridisSecale cereale24.2122.9393.4461forward
CNT30290295Setaria viridisTriticum aestivum39.2915.2593.9499forward
CNT30385644Setaria viridisTriticum turgidum37.712.1694.7495forward
CNT30554363Setaria viridisOryza glaberrima51.985.4690.08131forward
CNT30659718Setaria viridisTriticum dicoccoides51.9819.2691.6131forward
CNT304156Setaria viridisZea mays36.5122.7794.5792forward
CNT30680164Setaria viridisTriticum urartu51.9820.1293.13131forward
CNT30370617Setaria viridisOryza glumipatula37.734.5590.5395forward
CNT30148624Setaria viridisBrachypodium distachyon39.2923.5794.9599forward
CNT30581445Setaria viridisEchinochloa crusgalli57.1420.8199.31144forward
CNT30117138Setaria viridisOryza nivara37.77.990.5395forward

Expression of CNT30671430

Peptides detected in this lncRNA

>peptide 1 (82 aa)
SMAYIVDGAEELAGELLEVVAQVGGSEAEVVHDVRPRLLVDERLEVEDAGHGRHGLCHLSCLGFASTLLRWSSQEGAFSVEQS

>peptide 2 (51 aa)
MTYGHAFLSMSGLRLRMPVMDAMACAISAALASLPRFFGGAVRRELFRWSSL

Sequence

>CNT30671430
GCAGCATGGCTTACATCGTCGATGGTGCTGAAGAGCTTGCCGGTGAGCTCCTTGAGGTCGTAGCGCAGGTAGGAGGCTCGGAGGCGGAGGTCGTTCATGA
CGTACGGCCACGCCTTCTTGTCGATGAGCGGCTTGAGGTTGAGGATGCCGGTCATGGACGCCATGGCTTGTGCCATCTCAGCTGCCTTGGCTTCGCTTCC
ACGCTTCTTCGGTGGAGCAGTCAGGAGGGAGCTTTTTCGGTGGAGCAGTCTC