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Detailed information on CNT30671312


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691502Setaria viridisOryza sativa28.3524.4195.793forward
CNT30519964Setaria viridisSetaria italica47.2621.5699.35155forward
CNT30552636Setaria viridisOryza glaberrima28.3516.8295.793forward
CNT30654037Setaria viridisRosa chinensis20.1217.0587.8866forward
CNT30364531Setaria viridisSorghum bicolor31.7132.594.23104forward
CNT30595654Setaria viridisOryza meridionalis28.3515.994.6293forward
CNT30369561Setaria viridisOryza glumipatula28.3515.295.793forward
CNT30100228Setaria viridisOryza rufipogon28.3516.6495.793forward

Expression of CNT30671312

Peptides detected in this lncRNA

>peptide 1 (58 aa)
LAGDWGVEFRFRVQASVRRATMGYLAWNLVSQSARTPSSFSVRPERERGSIVCRCAAR*

Sequence

>CNT30671312
ACTCGCCGGTGATTGGGGGGTTGAATTCAGATTTCGAGTTCAGGCATCGGTGAGGCGGGCGACGATGGGGTACTTGGCCTGGAACTTGGTCTCCCAGTCA
GCGAGGACGCCGAGCTCCTTCTCGGTGAGGCCGGAGAGGGAAAGGGGATCGATCGTTTGCCGCTGCGCAGCGCGGTAGGTGTCTGTCACTCTGTCGTAGA
TTGTTGCGGGTTGCAAGTGAAGCGGCGAAGGAAGCGGTGGGCACCGGCGGTGTGATGTGAGCAGTAGACTGAGCAGCAGCTGCGTGAATGCCACGCGACT
GGCGACTGACTGCTGTGGCCTGCCCTTC