Detailed information on CNT30671247


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01300|NU1M_PETHY, E-value = 4e-33

BLAST vs NONCODE:
NONATHT001124, E-value = 1e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269710Setaria viridisChenopodium quinoa6.9829.2995.93123forward
CNT30162048Setaria viridisPistacia vera13.5786.5993.72239reverse complement
CNT3094424Setaria viridisSolanum tuberosum5.9139.194.23104reverse complement
CNT30226334Setaria viridisHordeum vulgare62.5883.3697.011102forward
CNT30555040Setaria viridisOryza glaberrima12.126.3699.06213forward
CNT30259423Setaria viridisBrassica rapa20.2724.3992.44357forward
CNT30627167Setaria viridisDaucus carota29.8747.9192.4526forward
CNT30687569Setaria viridisTriticum urartu76.666.3297.851349forward
CNT30104358Setaria viridisOryza rufipogon3.5823.1698.4163reverse complement
CNT30578173Setaria viridisOryza barthii80.2441.6298.371413forward

Expression of CNT30671247

Peptides detected in this lncRNA

>peptide 1 (48 aa)
VELPPHTAPLGMGVEARTLSGQVPLIDHNDIVEMQHGPIYIETEKEEP*

>peptide 2 (43 aa)
MKEKGLRIRKTKEAWRADYKTTTTIQAMSDSEAFSLFFRKPHN*

>peptide 3 (88 aa)
MPADQFTMSLSLTLVKEATWIGLGLLRLMRPRSRSLRSIFLIGASICMGNSLLKDPAQCPLPSPAAFRPKGVYNLFFRTLMPDRETAC*

>peptide 4 (62 aa)
MQLRGPLVGPDRWWYHTLLKGTVRETLASYGSVLESGPPPLSFDQRVLEPMGVTNHSLIDSR*

>peptide 5 (72 aa)
MAERRWQAVIWIRCFTRRRFSSSRKNCMGVVLGGTSRMTVPGNSTVLRAAMVVDPAEPTQRFRPDCRKWVIRF

Sequence

>CNT30671247
ACGTGGAGCTTCCGCCTCATACGGCTCCTCTAGGGATGGGGGTAGAGGCAAGAACACTTTCCGGCCAAGTCCCATTAATTGATCATAACGATATCGTGGA
AATGCAGCACGGACCCATATATATAGAAACAGAAAAAGAAGAACCTTGATACTAAACCAGATCGAACAAGGGATCTTCTTGGAAATGGGAAGATCTAGGA
TAGGCGGCCAACCTCCTGGAAAGAGCGATGTGCATAGACCGGGTGAGTAGGGATGCAGCTCCGTGGACCGCTCGTCGGGCCTGATAGGTGGTGGTATCAC
ACCCTTCTCAAAGGAACCGTACGTGAGACTCTCGCCTCATACGGCTCCGTCCTGGAATCAGGACCCCCCCCCCTTTCCTTTGACCAACGGGTCCTCGAAC
CCATGGGGGTTACGAATCATTCATTGATTGATTCAAGGTAGCTTCAGCCATTGTGGGTAGAAGCTAGTCGCCAGAAGCGAAGCGATCTTCCGGGCCGGAA
AGGAGGCCTTTTTCTGACGCGTAAGCTACCGCAAAATGAATGAAGGAAAAAGGCCTCAGGATTAGAAAGACTAAAGAGGCATGGAGGGCCGACTACAAGA
CTACGACTACAATACAAGCCATGAGCGATAGCGAAGCCTTCAGCCTTTTTTTTCGAAAGCCCCACAACTAGCTATCTTATAGCAGACAACTAAGGCAAGC
CTACTCAACTAATCTCATGTAAACGCCTGTTCGCAAAAATCCAAATAGAAAAAGACAACTACTTATTAAACATGTAGTTGAGTGCTCCGCCGTTGTTCGG
ATCTTGACCGAGTCCGAGCTTCCCAAGCTCTATGCTGTTTGGGAACTCTGCAAGGGTCTTACCACCTTCTTGATTGACTATATTTGAGTCTTTGGGGTAC
TTTGGGATTATATTCCGCGCCGAAGATTTGTGCTTGTGGGCTAGGGTGAATATAGCGGACCAGCGGATCTGGTAGTTGACAATCGTTCGGACTTGGTAAA
GGTTGTCGCAGCACCTGTAGTAGGACAGAGGACTTATCGCGATGCCCGCGGACCAATTTACTATGTCTCTGTCGCTGACGTTGGTCAAAGAGGCCACGTG
GATTGGCCTGGGTCTTCTTCGGCTAATGAGACCTCGATCCCGAAGCCTTCGGAGTATCTTTTTGATAGGCGCCTCTATCTGTATGGGGAATTCGCTGCTG
AAAGATCCCGCCCAGTGTCCCCTTCCTTCCCCCGCCGCCTTCCGACCAAAGGGAGTATACAATTTATTCTTCAGGACACTCATGCCCGATCGTGAGACTG
CCTGTTGAACGCCTGATGGCACCTTGCTCTGACCTGAGCTATGCAACAACGAGATCCCCCTTGATCTTTGCCGGATGTGCTTGACGGTCCCCCATAATAC
GCTAACTTGGGGACTTTTTAGTCCATCTTTTCCAAGAGTCTCCGCTAGTTGAACCGCGTCCAGTAGACGACCTCTTCCGCTCATCCCCTTCGTCAGCTCT
TTGATAGGGATACTATAACCTAGGTCCCTTAACTTGGAATGGATGGCGGAGCGTAGGTGGCAGGCAGTTATATGGATACGGTGCTTTACCCGTAGACGCT
TCTCCAGCTCTCGCAAGAATTGTATGGGAGTCGTCCTCGGGGGGACTTCCCGAATGACCGTACCGGGAAATTCTACCGTACTCCGTGCAGCTATGGTTGT
TGATCCTGCGGAGCCTACCCAAAGGTTCAGGCCGGATTGTAGGAAGTGGGTGATACGTTTT