Detailed information on CNT30671221


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691584Setaria viridisOryza sativa24.326.1687.580forward
CNT30520004Setaria viridisSetaria italica89.0657.45100293forward
CNT30254530Setaria viridisAvena sativa27.969.8285.8792forward
CNT30100143Setaria viridisOryza rufipogon24.327.587.580forward
CNT30603698Setaria viridisOryza punctata22.495.8889.1974forward

Expression of CNT30671221

Peptides detected in this lncRNA

>peptide 1 (70 aa)
PMRPGKNMLGPLTFSQHLGAAKDLTHHCHCRMGTHRAGAAGLGTCYSSSWQEVVVATCCSCALELVEVTC*

Sequence

>CNT30671221
ACCGATGCGCCCGGGCAAAAACATGCTGGGGCCCCTAACATTTTCCCAGCATCTTGGAGCAGCTAAGGATCTCACGCATCATTGCCATTGCCGTATGGGG
ACTCATCGCGCTGGGGCTGCTGGCCTGGGGACCTGCTATAGCTCCTCCTGGCAGGAGGTGGTGGTGGCGACTTGCTGTAGCTGCGCGCTCGAGCTGGTGG
AGGTGACCTGCTGAGACTCCGTGCACGAGGTGGCGGTGGAGACCTGCTGTCACTCCGCCTCCTAGGAGAACGATCCCGTGGGCTGTAGCTCCTGAAACAT
GCAAGACTTCGGCTGCGGCGCCTTCCAGT