Detailed information on CNT30671215


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6PL11|SKP1_ORYSJ, E-value = 2e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537681Setaria viridisEucalyptus grandis26.346.9489.0664forward
CNT30303844Setaria viridisTriticum aestivum28.8128.3498.5770forward
CNT30555334Setaria viridisOryza glaberrima26.7519.8296.9265forward
CNT30248050Setaria viridisAvena sativa20.993.8190.251reverse complement
CNT30666847Setaria viridisTriticum dicoccoides28.8128.1198.5770forward
CNT30137123Setaria viridisLolium perenne27.9812.5598.5368forward
CNT30348724Setaria viridisEragrostis tef27.577.6798.5167forward

Expression of CNT30671215

Peptides detected in this lncRNA

>peptide 1 (76 aa)
QDEVEERGLVDLDELGVPVLEVLCAGGAPERDHLLLGLGGRHQIETLDAAADRIQGDGYGDLGGGRGLAWLVVAFP*

>peptide 2 (46 aa)
RMRSKSVAWSTLTNSASQFLRSSAPAELLSVIIFFSASADAIKSKP*

>peptide 3 (32 aa)
MRLRIGSKGMDMGIWGAAVAWLGLLLLSRDLTP

Sequence

>CNT30671215
CCAGGATGAGGTCGAAGAGCGTGGCCTGGTCGACCTTGACGAACTCGGCGTCCCAGTTCTTGAGGTCCTCTGCGCCGGCGGAGCTCCTGAGCGTGATCAT
CTTCTTCTCGGCCTCGGCGGACGCCATCAAATCGAAACCCTAGATGCGGCTGCGGATCGGATCCAAGGGGATGGATATGGGGATTTGGGGGGCGGCCGTG
GCTTGGCTTGGCTTGTTGTTGCTTTCCCGTGACCTGACCCCTC