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Detailed information on CNT30671212


BLAST search results

BLAST vs Swiss-Prot:
sp|P12783|PGKY_WHEAT, E-value = 2e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693645Setaria viridisOryza sativa22.139.4182.5160forward
CNT30375078Setaria viridisArabidopsis thaliana16.0224.2287.07116forward
CNT30176931Setaria viridisSecale cereale17.2726.3782.4125forward
CNT30236790Setaria viridisBrassica oleracea19.7550.5381.12143forward
CNT3081642Setaria viridisBrassica juncea17.434.8182.54126forward
CNT30472489Setaria viridisSaccharum spontaneum22.3837.0788.27162reverse complement
CNT30686795Setaria viridisTriticum urartu25.5562.591.35185forward
CNT30596272Setaria viridisOryza meridionalis21.4167.3982.58155forward
CNT30116795Setaria viridisOryza nivara9.6732.869070forward
CNT30557143Setaria viridisPanicum hallii24.7223.9981.01179forward

Expression of CNT30671212

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTSLSQVHRSITLQCYTMVQNKMTRRLKPAELAPVA*

>peptide 2 (40 aa)
MRISTFASRDSMTPILVETLDPPTMAANGFKNLVTPSVEA*

>peptide 3 (50 aa)
MWLILSASPAFSTAATESPPPMMVVTPFVVASSSLSSSTRDFPTAYPCAL*

>peptide 4 (65 aa)
MSSVCRAKSVIYIKVSSRCKLLSKLRVILFFLLVESNILKEQNSTFRQSSSQFLNFLTNAIIGHHN

Sequence

>CNT30671212
AGGAAGTCAAAGCTTATTCACGACTCATCTAGCAAAACTCGATGACAAGCCTATCTCAAGTCCATAGATCCATTACTTTGCAATGTTACACCATGGTCCA
AAACAAAATGACACGCAGGCTGAAGCCAGCTGAGTTAGCTCCAGTAGCTTAGGCTTCGTCAAGGGCAAGAACACCTGGGAGCGTCTTGCCTTCCAACAGC
TCCAAACTCGCACCACCGCCTGTCGAAATGTGGCTCATCTTGTCAGCCAGCCCAGCCTTCTCAACAGCAGCAACAGAGTCACCGCCACCGATGATGGTTG
TGACACCCTTTGTGGTTGCAAGCTCAAGTTTGTCTTCCTCCACAAGAGACTTTCCAACAGCATATCCCTGTGCCTTGTAGAATGTGTAGATCATACCACC
ACCAAGGATGAGGATATCAACCTTTGCCAGCAGAGACTCAATGACCCCAATCTTGGTCGAGACCTTGGATCCACCAACAATGGCAGCAAATGGCTTCAAA
AACTTAGTAACTCCTTCTGTTGAAGCATGAGCTCTGTGTGCCGTGCCAAAAGCGTCATTTACATAAAGGTCAGCAGCAGATGCAAGCTTCTTAGCAAACT
CAGGGTCATTCTTTTCTTCCTCCTTGTAGAATCTAACATTCTCAAGGAGCAGAACTCCACCTTCCGGCAAAGCAGCAGCCAATTTCTCAACTTCCTCACC
AATGCAATCATTGGCCATCACAAC