Detailed information on CNT30671026


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520016Setaria viridisSetaria italica34.4622.63100143forward
CNT30460493Setaria viridisSaccharum spontaneum34.9416.7287.59145forward

Expression of CNT30671026

Peptides detected in this lncRNA

>peptide 1 (39 aa)
TVSNMDCKKNSDENYTHPPQKKQEIIHKAKPGDQNTYAS*

>peptide 2 (55 aa)
QYPTWIVKRIVTKIIPTHPKRNKKSYTKQNQATKIHMPPKLFLKPPPHNLWCGKL*

>peptide 3 (29 aa)
MDSQLIPVKERRLCLQKYLAAQKQCLKQK*

Sequence

>CNT30671026
ACAGTATCCAACATGGATTGTAAAAAGAATAGTGACGAAAATTATACCCACCCACCCCAAAAGAAACAAGAAATCATACACAAAGCAAAACCAGGCGACC
AAAATACATATGCCTCCTAAACTGTTTCTCAAACCCCCACCGCATAATCTGTGGTGTGGCAAGCTGTAGCCTCCTCACCTGTATCCTCCGTATGGCTGCT
GAGGTGCCTGAGAGGGGAAATTAGTAGAAACTGGCTGTTGGAGAACCACGGATGGATTCGCAGCTGATACCTGTGAAGGAAAGGAGGCTGTGTTTGCAAA
AATATCTTGCTGCTCAGAAGCAGTGTTTGAAGCAAAAGTGAGGGCTTTCTGCCTAACTTCCTGTATTCTTTCTTTATCATTAACTAAACTAACAAGGCTC
TGGGATTTCCTCCGT