Detailed information on CNT30670622


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691018Setaria viridisOryza sativa14.5621.5886.6760forward
CNT30302147Setaria viridisTriticum aestivum13.8321.9289.4757forward
CNT30461748Setaria viridisSaccharum spontaneum85.4471.1183.52352forward
CNT307225Setaria viridisZea mays46.3635.382.2191forward
CNT30364978Setaria viridisSorghum bicolor84.4779.0981.03348forward
CNT30584157Setaria viridisEchinochloa crusgalli45.3930.8189.3187forward

Expression of CNT30670622

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MRPGKNMLGPLTFSQHLGAAKDLTHHCHCRMGTHRAGAAGLGTCYSSSWQEVVVATCSGHGLAVAICCCSAEVVEVTC*

Sequence

>CNT30670622
CAATTGTATCAGCAGCGGTGTCCTCCCAGGAAACGAAAAACACTGAAACGATAAAAATGCAAGACTTTGAATCCTATAGAATTACATAAGTTGTACCGAT
GCGCCCGGGCAAAAACATGCTGGGGCCCCTAACATTTTCCCAGCATCTTGGAGCAGCTAAGGATCTCACGCATCATTGCCATTGCCGTATGGGGACTCAT
CGCGCTGGGGCTGCTGGCCTGGGGACCTGCTATAGCTCCTCCTGGCAGGAGGTGGTGGTGGCGACCTGCTCAGGTCACGGGCTGGCGGTGGCGATCTGCT
GTTGTTCCGCGGAGGTGGTGGAGGTGACCTGCTGAGACTCCGTGCACGAGGTGGCGGTGGAGACCTGCTGTCACTCCGCCTCCTAGGAGAACGATCCCGT
GGGCTGTAGCTC