CANTATAdb - search

Detailed information on CNT30670619

BLAST search results

BLAST vs Swiss-Prot:
sp|M1BJF6|JOKA2_SOLTU, E-value = 1e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30519875	Setaria viridis	Setaria italica	46.37	43.42	100	287	forward
CNT30584006	Setaria viridis	Echinochloa crusgalli	44.59	54.65	89.13	276	forward
CNT30495763	Setaria viridis	Digitaria exilis	44.43	24.42	91.27	275	forward

Expression of CNT30670619

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MFTSIRLVVFALLPSGGRFRLIAVFLLLSLTKEGSSTYR

>peptide 2 (83 aa)
MSKGSGAAALAAGIETGTVVGRIGTLTGEGPTGASSSGAGAGAGAGTLTEGTKAAAVALDMGTSTTRFAGAAAGIEVATTRAG*

>peptide 3 (80 aa)
CKEGIPFVDATQIIHRQLQVVIVLPKDFLVQINLPKAHFLQLPQQLLFIVTIYVKRLRCCGAGCRHRNRHSCRQDRHINR*

Sequence

>CNT30670619
CTGCAAGGAGGGGATCCCATTCGTTGACGCCACACAGATCATCCACAGACAGCTCCAGGTTGTAATTGTTCTGCCTAAGGATTTCCTTGTTCAGATCAAT
CTGCCTAAAGCCCATTTCCTCCAGCTCCCTCAGCAGCTTCTCTTCATTGTGACCATCTATGTCAAAAGGCTCAGGTGCTGCGGCGCTGGCTGCAGGCATA
GAAACAGGCACAGTTGTAGGCAGGATAGGCACATTAACAGGTGAAGGTCCAACCGGGGCAAGCAGCTCAGGTGCAGGTGCAGGTGCAGGTGCAGGCACAC
TAACAGAAGGCACAAAAGCAGCAGCAGTGGCACTGGACATGGGAACATCAACGACAAGGTTTGCAGGAGCTGCTGCAGGCATAGAGGTAGCAACTACTAG
AGCAGGCTGAGATTTCTTGGGCTCTGGAACATCACTCGGATAGAAGTGGAACTCTTTAGTGCGTTTGGCATGTGCACTAAGGGCTGGGTCAACAGGCTCA
ATGTTCACATCAATTAGGCTAGTTGTGTTTGCACTACTGCCTTCTGGTGGCAGATTCAGATTAATAGCAGTGTTCCTGTTATTGTCATTAACAAAGGAAG
GATCTTCCACCTACAGATG