Detailed information on CNT30670613


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639803Setaria viridisNymphaea colorata32.4723.4283.33126forward
CNT30515079Setaria viridisJuglans regia41.4931.4580.12161forward
CNT30372291Setaria viridisArabidopsis thaliana31.4436.8684.43122forward
CNT30636687Setaria viridisCapsicum annuum35.5717.481.88138reverse complement
CNT30188720Setaria viridisSecale cereale36.3431.0685.82141forward
CNT30302990Setaria viridisTriticum aestivum52.5871.8389.22204forward
CNT309074Setaria viridisZea mays62.8984.7295.08244forward
CNT30217218Setaria viridisKalanchoe fedtschenkoi24.2318.0884.0494forward
CNT30649581Setaria viridisRosa chinensis30.6718.7181.51119forward
CNT30595676Setaria viridisOryza meridionalis50.2648.7590.26195forward

Expression of CNT30670613

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MGATRDHMNRPAVAHWVAILTQTDGHPTSTSFPLSPMEVDQPVKSIAEYMLAREKMRWKKE*

>peptide 2 (64 aa)
ALDAPKGCTHPQVVPVDLEFPVGKEDGSNKGPYEQTCGCPLGCNPDPDRWPPNINKLSALTNGG*

>peptide 3 (32 aa)
MATQHQQAFRSHQWRLTSQSRALLSTCWPGRR*

Sequence

>CNT30670613
AAGCGCTTGATGCTCCAAAGGGATGCACGCATCCACAGGTTGTCCCAGTTGACCTAGAATTCCCTGTCGGGAAAGAGGATGGGAGCAACAAGGGACCATA
TGAACAGACCTGCGGTTGCCCACTGGGTTGCAATCCTGACCCAGACAGATGGCCACCCAACATCAACAAGCTTTCCGCTCTCACCAATGGAGGTTGACCA
GCCAGTCAAGAGCATTGCTGAGTACATGCTGGCCAGGGAGAAGATGAGGTGGAAGAAAGAGTAGGAGTATGTCACAGGCCTTGGCACATCCTTCTTATCT
TCTTGTTCATCAGCCTTGCTGAAGGGAAGCAATGGCTTGTCGGTTGAGTCCACAGTCATGTCCGGATGGAGTGAACCAGTGAAACAGA