Detailed information on CNT30670545


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30292019Setaria viridisTriticum aestivum15.2321.1393.3360forward
CNT30576975Setaria viridisOryza barthii21.3212.9694.0584forward
CNT30724464Setaria viridisLupinus angustifolius34.2632.1488.15135reverse complement
CNT3050527Setaria viridisCucumis sativus26.6517.5386.67105reverse complement

Expression of CNT30670545

Peptides detected in this lncRNA

>peptide 1 (32 aa)
QGLHPPRTFLPLSVSVKQKIVRRFHYIIRNSN*

>peptide 2 (41 aa)
MLIISFFFLLFLLIRSIQQRHARVTSEALRTGRNPAASCWL*

>peptide 3 (41 aa)
PRPASTKNISSLKRKRKTEDCEAFPLHNKKLELDLGNDRLQ*

Sequence

>CNT30670545
ACCAAGGCCTGCATCCACCAAGAACATTTCTTCCCTTAAGCGTAAGCGTAAAACAGAAGATTGTGAGGCGTTTCCACTACATAATAAGAAACTCGAATTA
GATCTTGGAAATGATCGACTCCAATAGATGCTCATCATAAGCTTTTTTTTCCTCCTATTCCTATTGATCAGAAGTATCCAGCAGCGCCACGCCAGAGTGA
CTTCCGAAGCGCTACGGACGGGACGAAATCCGGCAGCCAGTTGCTGGCTCTGAATAACCAGCTCAGCAAGAAGAAAAATTATTCCATAACCCAAAGCCCA
TAGCACTGGCGACGTCTCCGGCATAAATGCAAGGAGGATGTATAGCTGATATAGGATCTTGTGGAACAGGATTTGATTCTGCAAGCGGTTCGGT