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Detailed information on CNT3067052


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369810Leersia perrieriOryza glumipatula8.9628.9992.580reverse complement

Expression of CNT3067052

Peptides detected in this lncRNA

>peptide 1 (51 aa)
NAVRAGGDGRGGGGRRRVADAGPAARRRRQRGARWQWQILLAGLQWLLIEK*

>peptide 2 (47 aa)
MRYAPAATGAAAAAGDVSLTLGLQHAGAGNAGPDGSGRFSLRDYSGC*

>peptide 3 (84 aa)
MNVLSPLSVTKHKKHIHTYVNTYILVNIGIYVSVLTYLVKIKDRQTRVQECGHVWLACTCKLSVHLFRCPIFLRNQLMPCRGHNF

Sequence

>CNT3067052
AATGCGGTACGCGCCGGCGGCGACGGGCGCGGCGGCGGCGGCCGGCGACGTGTCGCTGACGCTGGGCCTGCAGCACGCCGGCGCCGGCAACGCGGGGCCC
GATGGCAGTGGCAGATTCTCCTTGCGGGACTACAGTGGTTGCTGATTGAGAAATGAGAATATATACTACTCCCACCCATCCATGATTTAATTTGGGGTTC
ATCATCCATCCATGCATTGCAATTGGGAACAGTAGAGTGAGAAGAAACAAGAGAGAGAAAAGGTAACAACAGCATGCAGCAAGGAGAGAGAAATTAAGAG
ATATCAGAGCCAAATGCAGAGAGATTAATTAGAGAGAAATTTAATTTGCAATGGTGCCTGAAGGGTGATGATGGTGGATATGCATGGATGGGGGATATAT
TAATATGAGAGAACTCAATCGATCTCCTTCTTTTTTTCCAAGATGATTCTTAATTTAGCTAGATTAATTCCTTTAGTTAGGACATTATTGTTGGGGGGTT
AAGGATAATTTGTATACAGGAAAGAAAGATAGGGAAGTGTATGTTATAGATTGTTTAGTCACACATTTGTTGTTCTCCGTTGCTTGCCCCTCTACATCTT
TTGTTTCTTTTTGTCACTTTTTGGTTTTGGTGTATTTATGAATGTTCTTTCCCCTCTCTCTGTAACTAAACATAAGAAACACATACATACATACGTAAAT
ACATATATATTGGTAAATATTGGGATATATGTGAGTGTGTTAACATACTTGGTAAAAATTAAAGATAGACAAACTCGAGTACAAGAGTGTGGCCACGTTT
GGCTGGCATGTACCTGCAAGTTGAGCGTGCATCTTTTCCGTTGCCCTATCTTTTTGAGGAACCAATTGATGCCATGTCGGGGGCACAATTTTC