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Detailed information on CNT30665536


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 3e-128

BLAST vs NONCODE:
NONSLYT002586, E-value = 7e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Triticum dicoccoidesSetaria viridis38.2433.8788.49252forward
CNT30640134Triticum dicoccoidesNymphaea colorata27.6226.4587.36182forward
CNT30547471Triticum dicoccoidesIpomoea triloba32.1739.1983.49212forward
CNT30512774Triticum dicoccoidesJuglans regia82.743.6781.65545forward
CNT30373037Triticum dicoccoidesArabidopsis thaliana77.5425.0982.78511forward
CNT3019595Triticum dicoccoidesCitrullus lanatus52.3562.1682.03345forward
CNT30728649Triticum dicoccoidesCorchorus capsularis52.0531.584.55343forward
CNT30405829Triticum dicoccoidesBeta vulgaris63.5850.7382.1419forward
CNT30636551Triticum dicoccoidesCapsicum annuum29.7429.784.69196forward
CNT30192963Triticum dicoccoidesSecale cereale39.9149.2595.82263forward
CNT30224330Triticum dicoccoidesHordeum vulgare60.3982.497.74398forward
CNT3085191Triticum dicoccoidesVigna radiata24.4322.4583.23161forward
CNT30510528Triticum dicoccoidesSolanum lycopersicum97.725084.16644forward
CNT30143750Triticum dicoccoidesMedicago truncatula40.6734.9982.09268forward
CNT30441049Triticum dicoccoidesAegilops tauschii37.9466.1497.6250forward
CNT30309902Triticum dicoccoidesCamelina sativa59.0334.383.55389forward
CNT30263667Triticum dicoccoidesBrassica rapa58.1254.1782.77383forward
CNT30612239Triticum dicoccoidesArabis alpina98.6324.7584650forward
CNT30445994Triticum dicoccoidesSaccharum spontaneum99.0945.8685.91653forward
CNT3015244Triticum dicoccoidesZea mays34.7582.3789.08229forward
CNT30210789Triticum dicoccoidesHelianthus annuus11.6821.2787.0177forward
CNT30716232Triticum dicoccoidesMalus domestica golden97.4248.4282.87642forward
CNT30479087Triticum dicoccoidesArabidopsis halleri29.8967.782.23197forward
CNT30361949Triticum dicoccoidesSorghum bicolor69.3554.1586.65457forward
CNT30705326Triticum dicoccoidesPrunus avium93.6348.0283.95617forward
CNT3054398Triticum dicoccoidesAmborella trichopoda46.8945.0479.29309forward
CNT3024028Triticum dicoccoidesPopulus trichocarpa51.7546.1485.92341forward
CNT30119815Triticum dicoccoidesCitrus clementina38.8555.7782.42256forward
CNT30557952Triticum dicoccoidesPanicum hallii57.8146.7586.88381forward

Expression of CNT30665536

Peptides detected in this lncRNA

>peptide 1 (62 aa)
GHRELHSPDWAGINFLLICQGCILGDELIQTNQSNSVTTGNILNRLLLLSHPDNSPLDTLHI*

>peptide 2 (73 aa)
MIRTFMPVATLPAKTRPKAKNLPLSDAGIILETYSIRGPSGSQFLIALAYISSRGPSYKFSTRYLCAFEGEGR*

Sequence

>CNT30665536
GGGGACACAGAGAACTTCATAGCCCTGATTGGGCAGGCATCAACTTCCTTCTCATTTGTCAGGGTTGCATTCTTGGTGATGAACTGATCCAAACCAACCA
AAGCAACAGTGTTACCACAGGGAACATCCTCAACAGACTCTTGCTTCTTTCCCATCCAGATAACAGTCCGCTGGACACTCTTCACATATAGATCCTTCTT
CTGGCCAGGAACAAAGTTGGGACCCATGATACGGACCTTCATGCCAGTTGCAACCCTCCCGGCAAAAACACGTCCAAAGGCAAAGAATCTACCCTTGTCA
GATGCTGGAATCATCTTGGAGACATACAGCATAAGAGGACCATCAGGGTCGCAGTTTCTGATAGCATTAGCATATATATCATCAAGGGGACCCTCATACA
AGTTCTCCACACGATACCTCTGTGCCTTTGAGGGAGAGGGGAGGTGAAATATCATCATCTCAAGCAGAGCACGACTGGCAGGCAGCCAAGTTTGCATCAC
ACGCTTCATGAGAGCCTTGCCCATCAAGTCCTTCTCATCATTCTTCATCGTCACACCAAGCTTCTTCAACATAGGCCACAACTTATCCTTCTGATCATTC
ATGCAGGTGGCTATGATTTGCTTGATTGGCTCATAGCAGAACTGAACAAAACCTCTCTT