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Detailed information on CNT30662954


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40073|RCAA_HORVU, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30295564Triticum dicoccoidesTriticum aestivum81.4275.14100390forward
CNT3068390Triticum dicoccoidesLeersia perrieri32.1529.1183.12154forward
CNT30683693Triticum dicoccoidesTriticum urartu87.0653.46100417forward
CNT30104149Triticum dicoccoidesOryza rufipogon34.6617.0482.53166forward
CNT30604795Triticum dicoccoidesOryza punctata35.2810.6982.84169forward
CNT30551777Triticum dicoccoidesOryza brachyantha36.1217.0384.97173forward

Expression of CNT30662954

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MENVLTVEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVL*

>peptide 2 (38 aa)
MCPYSSSFSTVIFGCSKVTHLRTSSSYTRARRAPKKSV*

>peptide 3 (31 aa)
SLPNRYTQYLYILTKHAQQSLGCDAVLRYKG*

>peptide 4 (54 aa)
MLKRCKGSCRRHSSPLGRSSWQSGRCILPAQQEMVGVYGECSNRRRNQSSSHPG*

Sequence

>CNT30662954
GTCTTTACCAAATAGGTATACTCAATATCTTTATATATTAACAAAACATGCCCAGCAATCGCTTGGATGCGATGCGGTACTTAGGTACAAAGGATAAAAA
TATCAGATATTAAATTGGCATGCTTAAAAGGTGTAAAGGCAGCTGCCGTCGTCACTCCTCGCCGTTGGGTCGAAGTTCTTGGCAGTCTGGTCGGTGCATC
CTGCCGGCACAGCAAGAGATGGTGGGTGTGTATGGAGAATGTTCTAACCGTAGAAGGAACCAGTCTTCATCGCATCCTGGTTAGCATCACCCAGAGCTGC
CTGGCTCATGTAGGTGTCAGCAAGCTGCACACGCTTGACATTGTCCTGCTCCTGGACGAGCATGTGCCCGTACTCTAGCAGCTTCTCGACTGTCATCTTT
GGCTGCTCAAAGGTCACCCACTTGCGCACCTCGTCGTCGTACACCCGAGCACGCAGAGCACCGAAAAAGTCTGTGTAGG