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Detailed information on CNT30662845


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40073|RCAA_HORVU, E-value = 4e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697166Triticum dicoccoidesOryza sativa27.8523.581.75137forward
CNT3096945Triticum dicoccoidesSolanum tuberosum14.2325.6491.4370forward
CNT30392014Triticum dicoccoidesTriticum turgidum51.8349.2398.04255forward
CNT30684251Triticum dicoccoidesTriticum urartu77.4437.43100381forward
CNT30151279Triticum dicoccoidesBrachypodium distachyon51.2245.6589.68252forward

Expression of CNT30662845

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MCPYSSSFSTVIFGCSKVTGPSREFTSFLPMFSIPVETPIRSSRVGAQ*

>peptide 2 (28 aa)
MSAASRYRCLMSLAGSPALPLSSSPALIM

>peptide 3 (57 aa)
LCSKRWWVCMENVLTVEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVL*

Sequence

>CNT30662845
CCTATGCAGCAAGAGATGGTGGGTGTGTATGGAGAATGTTCTAACCGTAGAAGGAACCAGTCTTCATCGCATCCTGGTTAGCATCACCCAGAGCTGCCTG
GCTCATGTAGGTGTCAGCAAGCTGCACACGCTTGACATTGTCCTGCTCCTGGACGAGCATGTGCCCGTACTCTAGCAGCTTCTCGACTGTCATCTTTGGC
TGCTCAAAGGTCACTGGTCCGTCCCGCGAGTTCACAAGCTTCTTGCCAATGTTCTCGATACCGGTAGAGACACCGATACGGTCGTCGCGGGTGGGAGCCC
AGTAGAACTTCTCCATACGACCATCACGGATGAGAGGGGCGTACAACGTTGAGAAATCGTTACCAGTGACGACGATGGGCAGCACATCTTACCCTTCTTG
ATCATGTCTGCAGCCTCACGGTACCGCTGCCTGATGAGCTTGGCTGGCTCTCCGGCGTTGCCACTCTCCAGCTCTCCGGCACTCATCATGAT