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Detailed information on CNT30662842


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 9e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524410Triticum dicoccoidesSetaria italica35.2425.1987.31197forward
CNT30438779Triticum dicoccoidesAegilops tauschii96.0685.193.11537forward
CNT30249379Triticum dicoccoidesAvena sativa31.6644.5897.18177forward
CNT30465769Triticum dicoccoidesSaccharum spontaneum36.1435.1387.13202forward
CNT30135675Triticum dicoccoidesLolium perenne30.9545.6595.95173forward
CNT306938Triticum dicoccoidesZea mays22.7215.9988.98127forward
CNT30353507Triticum dicoccoidesEragrostis tef27.9112.2192.31156forward
CNT30365046Triticum dicoccoidesSorghum bicolor36.1420.9887.13202forward
CNT30322408Triticum dicoccoidesAsparagus officinalis26.1216.885.62146forward
CNT30151052Triticum dicoccoidesBrachypodium distachyon21.4751.7295.83120forward
CNT30581942Triticum dicoccoidesEchinochloa crusgalli22.1826.6789.52124forward
CNT3039554Triticum dicoccoidesMarchantia polymorpha28.9844.2685.8162forward

Expression of CNT30662842

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MKKPSMENMASRPFLISFTLSSAAWSGSVARPSGSNGPPGWSLSSNSCRRS*

>peptide 2 (29 aa)
LPSEIRTVMFLLPLIIYTYGTFVLSNFSR*

>peptide 3 (80 aa)
MGHRGGACRQIPAGEVDQTVGQYKDAWLRQRISMFQDTDQPVGDPVVLGASDEDDLGDDGEDEVNGDAVAEVVEGVAVKEQ

>peptide 4 (66 aa)
PIRNQNGHVSSALDNLHVRHIRTLKLFPVKFTQHMLLHRAHAADHQQPTGSLRCAHRFSKGPSPVT*

Sequence

>CNT30662842
CTCCCATCAGAAATCAGAACGGTCATGTTTCTTCTGCCCTTGATAATTTACACGTACGGCACATTCGTACTCTCAAACTTTTCCCGGTAAAATTCACACA
GCACATGCTGCTGCATCGCGCGCACGCAGCTGATCATCAGCAACCGACGGGGTCGCTGAGGTGCGCGCACAGGTTCTCGAAGGGGCCCTCGCCGGTGACG
TAGGCCTGGATGAAGAAGCCCAGCATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTGAGCAGCGCCGCCTGGTCGGGGTCGGTGGCGA
GGCCGAGCGGGTCGAATGGGCCACCGGGGTGGAGCTTGTCGTCAAATTCCTGCCGGAGAAGTTGACCAAACCGTTGGTCAGTACAAGGACGCCTGGCTGC
GGCAACGCATATCTATGTTTCAGGATACTGACCAGCCCGTTGGTGATCCTGTAGTACTCGGCGCCTCCGACGAGGACGACCTCGGCGACGACGGCGAGGA
TGAGGTTAATGGGGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCGTCAAGGAGCAGG