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Detailed information on CNT30661171


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693577Triticum dicoccoidesOryza sativa8.2225.9887.8899forward
CNT30297862Triticum dicoccoidesTriticum aestivum33.7241.5192.86406forward
CNT30685445Triticum dicoccoidesTriticum urartu41.9439.2192.48505forward
CNT30101878Triticum dicoccoidesOryza rufipogon8.2223.0887.8899forward
CNT30574959Triticum dicoccoidesOryza barthii7.8129.5688.394forward

Expression of CNT30661171

Peptides detected in this lncRNA

>peptide 1 (58 aa)
CGSVEGELGGQQRLDQLFCDVSKGELLLLLRVCICAVLSCETSVAAWQDNLPPPHEEL*

>peptide 2 (42 aa)
MCLALWSDGYLFTCSISCRNYSPKAAYYYDFISSIDDLFFNN*

>peptide 3 (40 aa)
LRQRGRRARRSTAARPAVLRCFKGRTSFTAARMHMCCTIL*

>peptide 4 (40 aa)
MGIFLLAPSAAETIAQKQHTITISYHLLMICFLIIELVND*

>peptide 5 (36 aa)
MIKRCNVQDFLLDDLLIRFNFSRHLGTVYELIVHLA*

>peptide 6 (33 aa)
MDVLNTFQGSCLSIWSHYKSCCRNYFLFATDWC*

>peptide 7 (70 aa)
AAAWKESSAVNSGSTSCSAMFQRENFFYCCAYAYVLYYPVRRRWRRGRIICRLHTRSCEISASHSKVVAP*

Sequence

>CNT30661171
CTGCGGCAGCGTGGAAGGAGAGCTCGGCGGTCAACAGCGGCTCGACCAGCTGTTCTGCGATGTTTCAAAGGGAGAACTTCTTTTACTGCTGCGCGTATGC
ATATGTGCTGTACTATCCTGTGAGACGTCGGTGGCGGCGTGGCAGGATAATCTGCCGCCTCCACACGAGGAGTTGTGAGATTAGTGCATCACATTCAAAA
GTCGTCGCTCCGTGATTAGGGCATTGCATTCAGGCATTCAGTAGATTAGAAGGCATATTTAGCTAGCACTGGGATCCATCGCCATTGTAGGGCCTTGAAT
CTTTTCAATCCTTGCCAGTACAGTTCTTGCCATGAACGACGGGTCTCTCTCTGTGGTGTTAGTCCAAAAGCTGAAATAGGGAACAAGATGTGCCTTGCCC
TGTGGAGTGATGGGTATCTTTTTACTTGCTCCATCAGCTGCAGAAACTATAGCCCAAAAGCAGCATACTATTACGATTTCATATCATCTATTGATGATTT
GTTTTTTAATAATTGAATTGGTGAATGATTAAAAGGTGTAATGTTCAAGATTTTTTGCTAGATGATTTGTTGATTCGATTTAATTTTAGTAGGCATCTCG
GTACTGTTTATGAATTGATAGTGCACCTTGCTTAAATCCGACAGTATTATTTTTACCTTTCTGAAACAATCTTCCCGATATTTCATACTAACATGTGGCT
TGGCTCATACCAACGATAAAGTCCTGCTTTATATTGCCCAATCCTAAGTTGTGCCATCCTTTTTTGTAGTGATAGCTGTGTTGGGTCGGGTTGCAATGGA
TGTATTGAACACGTTTCAAGGGTCTTGTTTGTCGATCTGGAGCCACTATAAGTCATGTTGTCGAAATTACTTCTTATTTGCAACTGATTGGTGTTGACGG
GGCCACAGGCCACCAGAAGGTGCTCGTTGCTCACTTGAGTTTGCTCACTTGAGTCATAATAGAGGGAGTGAGAAGGTAAGAAGGGAGAAGAAGAAATAAC
CTTGCTGCCGGAGACGACATCCACACCATTTTTTGTGTGTTGGAGTGATTGAACCATGGCAATCAAAGCTGACATCACATCTCCTTCTTCATACACACTT
TTTGGGTAGTTGTGCATCTATATTCCATTCTGCACACCAAGAGATTATGTTATTTTCCTTTTACAAATCTGAACTATGTGAGACATTGCTATTTACTGAA
GCGG