« Back to Triticum dicoccoides search


Detailed information on CNT30659915


BLAST search results

BLAST vs Swiss-Prot:
sp|P36886|PSAK_HORVU, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694964Triticum dicoccoidesOryza sativa28.3715.993.2103forward
CNT30671922Triticum dicoccoidesSetaria viridis29.4829.6489.72107forward
CNT30520562Triticum dicoccoidesSetaria italica41.8733.9391.45152forward
CNT30289849Triticum dicoccoidesTriticum aestivum99.4588.4897.78361forward
CNT30436322Triticum dicoccoidesAegilops tauschii98.3584.497.76357forward
CNT30242614Triticum dicoccoidesAvena sativa50.6951.5490.76184forward
CNT3059741Triticum dicoccoidesArabidopsis lyrata34.4439.1880.8125forward
CNT30611008Triticum dicoccoidesArabis alpina38.5752.8380140forward
CNT30325346Triticum dicoccoidesAsparagus officinalis32.5124.8485.59118forward
CNT30102407Triticum dicoccoidesOryza rufipogon42.1544.0991.5153forward
CNT30581501Triticum dicoccoidesEchinochloa crusgalli39.9432.6693.79145forward
CNT30118070Triticum dicoccoidesOryza nivara2717.5393.8898forward

Expression of CNT30659915

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MIWSRTPEPHASVSARVKPAGSPVCSPDSRASSLSPAVAFLFADGASPNRPANSIRVVV

>peptide 2 (77 aa)
MERAMRMQNSYRRKRKVLADDLVEDAGAACERVGESEAGRVARLQPGLARLQLEPRRRLPVRRRRQPEPPGEQHQGRR

>peptide 3 (39 aa)
AWDEAVATPARRYVPLKQRCIHIHTLYYTTSSNHKGSIN*

Sequence

>CNT30659915
GCATGGGATGAAGCAGTTGCCACACCGGCGCGGCGGTACGTCCCGCTGAAACAAAGATGCATACACATACATACATTGTACTACACCACATCATCAAATC
ACAAAGGGAGCATTAATTGATCCACTACATGGAGCGCGCGATGCGGATGCAGAACAGCTATCGACGGAAAAGGAAGGTTCTAGCCGATGATCTGGTCGAG
GACGCCGGAGCCGCATGCGAGCGTGTCGGCGAGAGTGAAGCCGGCCGGGTCGCCCGTCTGCAGCCCGGACTCGCGCGCCTCCAGCTTGAGCCCCGCCGTC
GCCTTCCTGTTCGCCGACGGCGCCAGCCCGAACCGCCCGGCGAACAGCATCAGGGTCGTCGTG