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Detailed information on CNT30659718


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41048|PSBQ1_MAIZE, E-value = 8e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694735Triticum dicoccoidesOryza sativa23.5320.291.88160forward
CNT30671430Triticum dicoccoidesSetaria viridis19.2651.9891.6131forward
CNT30520717Triticum dicoccoidesSetaria italica25.5923.8489.08174forward
CNT30179895Triticum dicoccoidesSecale cereale26.3267.2998.88179forward
CNT30290295Triticum dicoccoidesTriticum aestivum31.4732.9798.13214forward
CNT30385644Triticum dicoccoidesTriticum turgidum4539.1894.44306forward
CNT30554363Triticum dicoccoidesOryza glaberrima32.359.1691.36220forward
CNT30243623Triticum dicoccoidesAvena sativa27.3572.0985.48186forward
CNT30453977Triticum dicoccoidesSaccharum spontaneum3068.9287.75204forward
CNT30132226Triticum dicoccoidesLolium perenne26.3282.1182.12179forward
CNT304156Triticum dicoccoidesZea mays29.2649.2686.43199forward
CNT30680164Triticum dicoccoidesTriticum urartu45.5947.6297.42310forward
CNT30351417Triticum dicoccoidesEragrostis tef17.3554.8890.68118forward
CNT30362913Triticum dicoccoidesSorghum bicolor26.766585.16182forward
CNT30370617Triticum dicoccoidesOryza glumipatula32.358087.27220forward
CNT30148624Triticum dicoccoidesBrachypodium distachyon31.3250.7194.37213forward
CNT30581445Triticum dicoccoidesEchinochloa crusgalli3534.3989.5238forward
CNT30496557Triticum dicoccoidesDigitaria exilis27.579.5788.77187forward
CNT30117138Triticum dicoccoidesOryza nivara29.5616.7188.06201forward

Expression of CNT30659718

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMYEQLEALTESTGERRRWANLDGRDGAGVHHLSERAADDSAGHETKDRAAAGGLRLRRRRPHGEPAGAPAGHGRHGLRHLKLCFSLLFLPCVSLLS

>peptide 2 (36 aa)
MTYGHCFLSMSGLRLRMSWADSLARTAASAGGSGCR*

>peptide 3 (53 aa)
MRPRTARRPAASASADDALTVNLLARLPVMDAMVCAISSFASLFSSCPVFLSYP

Sequence

>CNT30659718
GTTTCTGAAGAGACATAAGGTAGCTGAAATTGCGAGATGGTAGGTTTCTTACCCCGTCGAGGGTGGCGAAGAGCTTGCCGGTGAGGTCCTTGAGGTCATA
GCGTAGGTAGGAGGCCCTGAGGCGGAGGTCGTTCATGACGTACGGCCATTGCTTCTTGTCGATGAGCGGCTTGAGGTTGAGGATGTCCTGGGCCGACTCC
TTGGCCCGGACCGCCGCCTCCGCCGGTGGCAGCGGCTGCAGGTAGAACCGGTTCTTCAGGGGCAGGTCGAAGTCCCTTGCCTCGTCGGAGTTGTCCGTGC
CGGCTGAACACACACCCAAATCATCCATCAGATCAGGCGTAAAATCATTATATATATATAGTCTACTAAAGCGAGCATAGTATGGTAGATGATGTACGAG
CAGCTGGAGGCACTCACGGAGTCCACCGGAGAGCGGCGGCGGTGGGCCAACCTTGATGGCCGCGACGGTGCCGGCGTGCACCACCTGAGCGAACGCGCTG
CCGACGACTCCGCTGGCCATGAGACCAAGGACCGCGCGGCGGCCGGCGGCCTCCGCCTCCGCCGACGACGCCCTCACGGTGAACCTGCTGGCGCGCCTGC
CGGTCATGGACGCCATGGTTTGCGCCATCTCAAGCTTTGCTTCTCTCTTCTCTTCTTGCCCTGTGTTTCTCTCTTATCCC