« Back to Triticum dicoccoides search


Detailed information on CNT30659005


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694940Triticum dicoccoidesOryza sativa32.7531.9689.2593forward
CNT30672185Triticum dicoccoidesSetaria viridis50.3526.1488.81143forward
CNT30520486Triticum dicoccoidesSetaria italica50.3527.1988.81143forward
CNT30221871Triticum dicoccoidesHordeum vulgare41.951.7496.64119forward
CNT30436523Triticum dicoccoidesAegilops tauschii29.5812.7197.6284forward
CNT30450016Triticum dicoccoidesSaccharum spontaneum50.3512.9490.91143forward
CNT30352666Triticum dicoccoidesEragrostis tef47.8916.8190.44136forward
CNT30362862Triticum dicoccoidesSorghum bicolor50.3528.2190.91143forward
CNT30370761Triticum dicoccoidesOryza glumipatula52.4615.0287.92149forward
CNT30325402Triticum dicoccoidesAsparagus officinalis23.945.9386.7668reverse complement
CNT30147603Triticum dicoccoidesBrachypodium distachyon38.3836.5888.07109forward
CNT30100764Triticum dicoccoidesOryza rufipogon37.3239.2689.62106forward
CNT30496353Triticum dicoccoidesDigitaria exilis50.3512.589.51143forward

Expression of CNT30659005

Peptides detected in this lncRNA

>peptide 1 (63 aa)
LLVCSGRSRAGAGATAGSRRGRRRRGGRRSRRGGGRRRRRRRRRGPRRAGAGGTSGRGTRRWF*

>peptide 2 (93 aa)
CWFVVVEVGLGLGRRRGVEEVVGVEEVDGVVGEEGGDVVDVVGEVLVELVLAEPVVAEPGGGFDQLPPLGRVVLHLLERRRDEHGRVRVQRRHR

Sequence

>CNT30659005
CCTGCTGGTTTGTAGTGGTAGAAGTCGGGCTGGGGCTGGGGCGACGGCGGGGAGTAGAAGAGGTCGTCGGCGTCGAGGAGGTCGACGGAGTCGTCGGGGA
GGAGGGCGGCGACGTCGTCGACGTCGTCGGCGAGGTCCTCGTAGAGCTGGTGCTGGCGGAACCAGTGGTCGCGGAACCAGGCGGTGGTTTTGACCAGCTC
CCACCACTCGGGCGAGTAGTCCTCCACCTTCTTGAACGCCGCCGGGATGAACATGGGCGCGTCCGGGTTCAGCGCCGACATCGC