| Target | Query species | Target species | Query coverage (%) | Target coverage (%) | Identity | Alignment length (nt) | Orientation |
| CNT30676186 | Triticum dicoccoides | Setaria viridis | 28.45 | 15.08 | 92.65 | 68 | forward |
| CNT30524031 | Triticum dicoccoides | Setaria italica | 50.63 | 44 | 91.74 | 121 | forward |
| CNT30546615 | Triticum dicoccoides | Ipomoea triloba | 48.95 | 43.49 | 85.47 | 117 | forward |
| CNT30517210 | Triticum dicoccoides | Juglans regia | 28.03 | 10.42 | 92.54 | 67 | forward |
| CNT3020673 | Triticum dicoccoides | Citrullus lanatus | 50.63 | 11.38 | 89.26 | 121 | forward |
| CNT30728378 | Triticum dicoccoides | Corchorus capsularis | 47.28 | 8.99 | 84.07 | 113 | forward |
| CNT3070603 | Triticum dicoccoides | Quercus suber | 24.69 | 15.53 | 86.44 | 59 | forward |
| CNT30709876 | Triticum dicoccoides | Glycine max | 36.82 | 24.65 | 85.23 | 88 | forward |
| CNT3046104 | Triticum dicoccoides | Prunus dulcis | 32.22 | 17.42 | 87.01 | 77 | forward |
| CNT30163276 | Triticum dicoccoides | Pistacia vera | 48.12 | 37.34 | 84.35 | 115 | forward |
| CNT30288667 | Triticum dicoccoides | Triticum aestivum | 100 | 30.96 | 100 | 239 | forward |
| CNT30224613 | Triticum dicoccoides | Hordeum vulgare | 61.92 | 54.61 | 89.86 | 148 | forward |
| CNT30590280 | Triticum dicoccoides | Musa acuminata | 49.37 | 22.74 | 85.59 | 118 | forward |
| CNT30541063 | Triticum dicoccoides | Brassica napus | 43.1 | 12.97 | 83.5 | 103 | forward |
| CNT3061285 | Triticum dicoccoides | Arabidopsis lyrata | 51.46 | 16.92 | 81.3 | 123 | forward |
| CNT30131632 | Triticum dicoccoides | Lolium perenne | 21.76 | 23.74 | 98.08 | 52 | forward |
| CNT30232947 | Triticum dicoccoides | Ananas comosus | 43.1 | 43.46 | 88.35 | 103 | forward |
| CNT30681640 | Triticum dicoccoides | Triticum urartu | 94.56 | 19.27 | 99.56 | 226 | forward |
| CNT30364938 | Triticum dicoccoides | Sorghum bicolor | 52.72 | 13.74 | 85.71 | 126 | forward |
| CNT30706531 | Triticum dicoccoides | Prunus avium | 32.22 | 10.91 | 88.31 | 77 | forward |
| CNT3038708 | Triticum dicoccoides | Cucumis melo | 36.82 | 6.7 | 88.64 | 88 | forward |
| CNT30603734 | Triticum dicoccoides | Oryza punctata | 89.96 | 16.37 | 86.98 | 215 | forward |
| CNT30112149 | Triticum dicoccoides | Ficus carica | 37.24 | 11.34 | 88.76 | 89 | forward |
| CNT3050457 | Triticum dicoccoides | Cucumis sativus | 36.82 | 15.3 | 87.5 | 88 | forward |
>CNT30658930
GTGGTCTGACCAGGCGTGCTCCCTGTTGTAGATGATGGCCGCGCCGAGGCCGGAGCCCTTGGTGTAGCCGGGCGCCACCACGTTGGCGCCGCCGCCGTTG
CCCATGTACAGGCCCTGCTGGAACCCCTTCACCACGCCGGCGCCGCAGATGGCGCCCAGGCACTGCATGATGATGTAGAACACCGCCCTGGTCAGCGACA
GCTTCCTCGCCAGGAACAGCCCGAAGGTCACCGCCGGGT