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Detailed information on CNT30658759


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 2e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Triticum dicoccoidesOryza sativa64.742.5690.08383forward
CNT30676635Triticum dicoccoidesSetaria viridis48.6582.7688.89288forward
CNT30631438Triticum dicoccoidesVigna unguiculata25.5122.8184.11151forward
CNT30487971Triticum dicoccoidesOlea europaea23.1426.3586.13137forward
CNT30287617Triticum dicoccoidesTriticum aestivum56.5958.8897.91335forward
CNT30393350Triticum dicoccoidesTriticum turgidum41.0524.2881.48243forward
CNT30171906Triticum dicoccoidesTrifolium pratense27.718.7981.1164forward
CNT30441093Triticum dicoccoidesAegilops tauschii37.1643.3179.55220forward
CNT30254596Triticum dicoccoidesAvena sativa56.5925.2685.67335forward
CNT3062430Triticum dicoccoidesArabidopsis lyrata39.8620.4779.66236forward
CNT30717839Triticum dicoccoidesMalus domestica golden51.5260.0479.02305forward
CNT30625756Triticum dicoccoidesDaucus carota20.124.5481.51119forward
CNT30685178Triticum dicoccoidesTriticum urartu21.7915.8984.5129forward
CNT3053264Triticum dicoccoidesAmborella trichopoda27.225.7281.99161forward
CNT30150411Triticum dicoccoidesBrachypodium distachyon55.9165.5486.1331forward
CNT30101573Triticum dicoccoidesOryza rufipogon50.5135.390.97299forward
CNT30498115Triticum dicoccoidesDigitaria exilis54.5640.7386.69323forward
CNT30558331Triticum dicoccoidesPanicum hallii71.9651.4587.56426forward

Expression of CNT30658759

Peptides detected in this lncRNA

>peptide 1 (52 aa)
GIQLARTCIYVCFAYITISSASLQTSNFKRVKEERDKKRRGEHITERAVILI*

Sequence

>CNT30658759
CTGGCATACAGCTTGCTCGTACATGCATCTATGTTTGTTTCGCTTACATAACAATTTCTAGTGCCTCGCTTCAAACTTCGAACTTCAAGAGAGTGAAAGA
AGAGAGAGACAAAAAAAGAAGAGGAGAACACATAACTGAAAGGGCAGTGATATTAATCTAGGCACTCAGAGCAGGCTCCAGCGGCTCTGCAATACCACCC
CCGCTGTTGAGAACTACCACCTTACCATCCGAATCCACATCAACAATAGCAGAATCACCTTCCTTGACCTCGCCAGCCAGCATCTTTTCCGCCAGACTGT
CTTCCAAAAGCCTCATAATGGCACGTCGCAGAGGCCTGGCACCGTAGCTCGGGTTGTAACCTTCATCGACAACCCTATCCCGGAACTTCTCTGTTACCTG
GAGGTCGATTTCCTTTGCCTTGAGCCTGTCAAACACCTCCTTGAGCATAATATCAGCGATCTCTTTCACCTCCAGCTTTGTCAGCTGCCGGAACACAATC
ATCTCATCCAATCTGTTCAAGAACTCTGGCCGGAAATACTGCTTCAACTCCTCGGTCACCAAGCTCTTGATCCTGTTATAGCTGGTATCTTT