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Detailed information on CNT30656490


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 9e-52

BLAST vs NONCODE:
NONGMAT000508, E-value = 8e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Triticum dicoccoidesSetaria viridis41.162.195.67254forward
CNT30523218Triticum dicoccoidesSetaria italica50.3256.9694.53311forward
CNT30549690Triticum dicoccoidesIpomoea triloba30.144.2986.02186forward
CNT30703567Triticum dicoccoidesQuercus lobata38.6747.3383.26239forward
CNT30375418Triticum dicoccoidesArabidopsis thaliana13.9236.4487.2186forward
CNT30617135Triticum dicoccoidesSesamum indicum47.7329.4184.75295forward
CNT3069058Triticum dicoccoidesQuercus suber36.2525.682.14224forward
CNT30284518Triticum dicoccoidesTriticum aestivum99.8499.0499.84617forward
CNT30219776Triticum dicoccoidesHordeum vulgare39.6458.1997.96245forward
CNT3086297Triticum dicoccoidesVigna radiata50.9727.0983.49315forward
CNT30435717Triticum dicoccoidesAegilops tauschii98.38100.1691.61608forward
CNT30244338Triticum dicoccoidesAvena sativa50.4956.2295.19312forward
CNT30471244Triticum dicoccoidesSaccharum spontaneum51.4633.2396.54318forward
CNT30720165Triticum dicoccoidesTriticum spelta33.0143.593.63204forward
CNT30348363Triticum dicoccoidesEragrostis tef50.4956.0195.83312forward
CNT30357929Triticum dicoccoidesLactuca sativa46.9364.7380.34290forward
CNT30370989Triticum dicoccoidesOryza glumipatula47.7347.293.56295forward
CNT30645456Triticum dicoccoidesCannabis sativa31.3925.2987.63194forward
CNT30325970Triticum dicoccoidesAsparagus officinalis34.7931.1685.12215forward
CNT30117618Triticum dicoccoidesOryza nivara36.5750.2293.36226forward

Expression of CNT30656490

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MRPEMRFTPPLLARRRMAGLVMPWMLSRRTFRWRLAPPLPSPLPPLPRPDMADDPLGAAARVGLRERW*

>peptide 2 (30 aa)
MTVFSRLQAAATAGRSCWLKARRRRVADGD*

Sequence

>CNT30656490
CATCGAACTCGCGTCATTTGCAGGGGAAGACGATATATATTCGATCTCATGACTGGGCTCATGGAGCTACAAGGTAACTAGAGACATTCTGCGATAGACA
GATGGGTGAACAGGCAACATTTGTTCCGGCTACAGCTACTGAACGAAAGATATGACAGTTTTCTCGCGTCTGCAGGCTGCAGCCACGGCGGGGCGGAGTT
GTTGGCTGAAGGCGAGGAGGCGACGGGTTGCGGACGGAGATTGACGCCTAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGA
CGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCACGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTC
CTCGTAGATGAGGCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGGCGCCGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGAAGAACCTTC
CGGTGGCGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGCCCAGACATGGCTGACGATCCTCTTGGAGCTGCTGCGCGAGTGGGATTGA
GGGAGCGGTGGTGATGGG