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Detailed information on CNT30652435


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-159

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-130

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30510145Rosa chinensisSolanum lycopersicum64.3148.686.56692forward
CNT30603673Rosa chinensisOryza punctata61.1566.5387.69658forward

Expression of CNT30652435

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVSEDSTSRVIVLPVRVFTKICICNTQNNIRPPFYIKIHHQ*

>peptide 2 (61 aa)
MSLCWSGGMPSLSWILAFTLSMVSELSTSRVMVFPVRVLTKICIPPRRRRTKWRVDSFWML*

>peptide 3 (33 aa)
NIINRRSKFIYKTKSTIGNKTCPITSTGRQYQT*

>peptide 4 (40 aa)
MVSELSTSRVMVFPVKVLTKICIPPRRRSTKWRVDSFWML*

Sequence

>CNT30652435
GAAACATAATTAACAGAAGATCCAAATTTATTTATAAAACCAAGAGTACCATAGGAAATAAAACTTGTCCAATTACCTCAACAGGGAGGCAATACCAAAC
ATGAAATTAAAATACTTGCCTCAGCAAGGAAGCAATAAAAGTACCACAAAAGTAAAAACATAAAAGAAAACACTGTCACCAAAGGATCTTCACAGCGGCT
GCCTTGCAATCACCAGACTTCAGAAACCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGCCCATC
CTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTGTCTGAGCTC
TCCACCTCAAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGA
TGTTATAGTCTGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGC
CTTCACGTTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCATACCACCACGCAGACGAAGA
ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCTAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGG
GAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAA
AATTTGCATCTGCAATACACAAAATAACATAAGACCTCCATTCTATATCAAAATCCATCATCAATAACATGTAGACTTATTGAAAAGTAAAAACTATATC
ATACAAAAGGTGAAAAGGTACTACCAATCAAACACAAATCCAACTTCCAAACAACGAATCAATTTTCAAACTTTCC