Detailed information on CNT30652166


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316271Rosa chinensisCorylus avellana14.8529.791.74109forward
CNT3020680Rosa chinensisCitrullus lanatus21.831.3781.88160forward
CNT3069315Rosa chinensisQuercus suber26.9863.4682.83198forward
CNT30503107Rosa chinensisNicotiana attenuata10.0832.0387.8474forward
CNT30561732Rosa chinensisActinidia chinensis43.1926.3782.33317forward
CNT30216754Rosa chinensisKalanchoe fedtschenkoi14.1723.6489.42104forward
CNT30596912Rosa chinensisOryza meridionalis13.924.3484.31102forward
CNT30705559Rosa chinensisPrunus avium29.5645.7892.63217forward

Expression of CNT30652166

Peptides detected in this lncRNA

>peptide 1 (44 aa)
NSSYLTFKMDDQKASTSCKHRFSSWDAAHLYKAEKQKGKKHRNT*

>peptide 2 (44 aa)
MTSCFPLILSLYQSIEKSRAKAAGAASKSASFSNSGTTLSGFFT*

>peptide 3 (37 aa)
MYESRSRSLCFRWLRQYSKMGGPTSPSNSPTTTMEHS*

>peptide 4 (39 aa)
MIKRHPLHVNIDSVHGMQPISIKQKNRKGKSIETHKRHV*

Sequence

>CNT30652166
AGAACAGCAGTTATCTGACGTTTAAGATGGATGATCAAAAGGCATCCACTTCATGTAAACATAGATTCAGTTCATGGGATGCAGCCCATCTCTATAAAGC
AGAAAAACAGAAAGGGAAAAAGCATAGAAACACATAAGAGACACGTTTAACCAGTGTTCTGCAAGCCAGCTGCAATACCCTTCATTGTCAAGATAAGGGT
GTCCTCCAAACCAGGGGCGTACTCACTTGTTGGGTTCAGCTTCACAAGTTCATCAGCTGGTTTGTTTGACTCCGTAATCTCCTTGGACAGATGTGGTCGC
ACAGTCACATGGTAGGTAGGATCTCGGATCCTTTTCAGTGTATATGCTTGGCAAACATTGAGGGTGGTGATGTATGAATCACGCAGTCGGAGTCTTTGCT
TCAGGTGGTTGAGACAATATAGCAAGATGGGTGGGCCCACCTCCCCTTCCAACAGTCCCACCACGACCATGGAACATAGTTAGCTTCACACCAAAATCCT
TAGCAACCTTTATAAGGTCCTCCTGTGCCTTGTATAACTGCCAGCCAGCTGAAAAACGCCCTGCATCTTTACCAGAATCTGAGTACCCAATCATGACTTC
TTGCTTTCCATTGATCCTTTCCCTATACCAATCAATTGAGAAGAGCCGAGCCAAAGCAGCAGGAGCAGCCTCCAAATCTGCAAGCTTCTCAAACAGTGGA
ACGACTCTCAGTGGTTTCTTCACATGACATTCAC