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Detailed information on CNT30651648


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522103Rosa chinensisSetaria italica26.0536.8979.77173forward
CNT30392832Rosa chinensisTriticum turgidum9.7923.4786.1565forward
CNT30621898Rosa chinensisCajanus cajan29.2230.3684.54194forward
CNT3025070Rosa chinensisPopulus trichocarpa29.0730.5481.87193forward

Expression of CNT30651648

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MFNADACKICSGTLGVLWLLVVVHLDASEIENSTMAG*

>peptide 2 (74 aa)
ERTRAWSHCHCHYVTLYTNMQYKTLVLKWWNRTNKLASLILHFQCVRATAASCTKGVVTCTKCSASLSTCSLHF*

>peptide 3 (35 aa)
MLARSAREHWASCGCSWSCISMQVKLKTAPWRANI*

Sequence

>CNT30651648
GAGAAAGGACCAGGGCATGGAGCCACTGTCACTGTCATTATGTGACCTTGTATACGAATATGCAATATAAGACACTAGTTTTGAAGTGGTGGAACCGTAC
AAACAAACTAGCTAGCCTAATCCTGCATTTTCAGTGCGTCAGAGCAACAGCAGCCTCCTGCACCAAAGGTGTTGTAACGTGCACAAAATGCTCGGCTTCC
CTCTCCACCTGTTCCCTACACTTTTGAGTGTTCTTTCCTTCCTTCATTTTCTTCACAAATGACACAAAACGCCTCCAGTTGTCGGCCTGGAATAGTTGCG
GGTTCATCCTCAAGTATGTGAACGCACACATCTGCTTGCCTTCAGTGTTGCCCTCAATGTTCAACGCTGATGCTTGCAAGATCTGCTCGGGAACATTGGG
CGTCCTGTGGCTGCTCGTGGTCGTGCATCTCGATGCAAGTGAAATTGAAAACAGCACCATGGCGGGCTAACATCTGAGCAATGGGTAGGTAACCATCCCG
GAATCGTGTGTTGTAGTACCCTGCTGTGAGCTCGGGGGCGTGGGACCGGGTTCCATAATGCCAATGGATGCCTGCAATCTTTACTGAGATTTTCACACCC
TCATTCTCATAGATAGACTTGGCTGAGGAAAGGATCCTCTCACCATGGTCCATGAGCAACTGGG