CANTATAdb - search

Detailed information on CNT30650562

BLAST search results

BLAST vs Swiss-Prot:
sp|C7J4U3|OST4A_ORYSJ, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30318482	Rosa chinensis	Corylus avellana	15.2	20.59	88.66	97	forward
CNT30282360	Rosa chinensis	Chenopodium quinoa	10.03	31.22	100	64	reverse complement
CNT30205883	Rosa chinensis	Helianthus annuus	11.29	32	100	72	forward
CNT30359974	Rosa chinensis	Lactuca sativa	16.3	21.8	86.54	104	forward

Expression of CNT30650562

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYE*

>peptide 2 (42 aa)
QVGYHLSGCSLVVRIPRCGRGDLGSNPSSHTCKFFAFFFFFL*

Sequence

>CNT30650562
CGCAGGTAGGTTATCATCTAAGTGGCTGTAGTTTAGTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAGCAGCCACACTTGTAA
ATTTTTTGCCTTCTTTTTTTTCTTTTTATAAGTACAAACAACAGGTAATACGGCGCCGTTTGCTCGTCACTAACGCCAGGTTTATAAACGTAGACCCATC
GCACTCGTTACCCTCCTCGACATACAGTTACACAGAGCTTCGACTTCTGCCATTGACTCAGACTGCTCGCCTCCAAAAACTATGTTTGACGATCAGGACC
TGGGCTTCTTTGCCAATTTCCTTGGCATCTTCATCTTTGTTTTGGTAATCGCGTATCATTATGTGATGGCTGACCCAAAATATGAATAGACATGCCATTT
TTGCTATTGATAGAGATGTCCTATTACTTTTGTAGTATGAGTGGTTTCACAATGGATACAACTTAATTTAGTTAAAGGCGTTATTATGCAATATGAATGT
TCGCTATTATAGACACGTGATTTTCATTCACTTATAATTTCTGCTTTCATAAAAAGTTTGCAGCACTTTTGCGTTGATACTAATGGATATTGGCTGTGTT
TATATTTGAATTTGGTTATACTGTTTGATAAGATGTTA