Detailed information on CNT30650073


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39255|SKP1A_ARATH, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317831Rosa chinensisCorylus avellana21.6925.7784.92126forward
CNT30516841Rosa chinensisJuglans regia21.3415.3187.1124forward
CNT30589619Rosa chinensisMusa acuminata16.3537.1185.2695forward
CNT30555334Rosa chinensisOryza glaberrima16.729.5788.6697forward
CNT30259882Rosa chinensisBrassica rapa22.0333.5182.81128forward
CNT30686076Rosa chinensisTriticum urartu17.2135.5988100forward
CNT30592775Rosa chinensisEragrostis curvula15.6636.9984.6291forward
CNT30112782Rosa chinensisFicus carica20.1414.0687.18117forward

Expression of CNT30650073

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLYALQISSGVIVLIMSATLWQVSRRPSS*

>peptide 2 (79 aa)
MCFLQYSMTLAKILLGKGISMSAQSSSIMCRMVCDSKATSSSTSNDSPSELFSVIFLPDDIVSIAAVVTLETSTEREMK*

Sequence

>CNT30650073
CCAACGAAACGTAGTTCACTAAGTAAAGAAAAAGCAGTTCAGAAACAGACAGACCATAGCACATAAAGAGCAACAAACAACAAAAACAGGTTTCTTCGTA
TTTATGACCTTCACTCAAAAGCCCATGGGTTCTCCCTGCGGACCTCTTCCTCTTCCTCTGGTGTAAATTCAGTCTTGATGTTGTATGCCTTGCAAATATC
CTCAGGAGTTATCGTCTTGATCATGTCCGCCACCCTCTGGCAAGTAAGTCGGCGTCCCAGTTCTTGAGCTCATCGTCGCCGGAGGAGGAGGAGGAGCGGT
CGTCGGACTTAGGCGCAGCGTCGATGTGCTTCTTGCAGTATTCGATGACCTTAGCCAAGATCTTGCTGGGGAAAGGGATCTCAATGTCGGCGCAATCGTC
CTCGATCATGTGCCGGATGGTCTGCGATTCCAAAGCCACCTCCTCGTCCACCTCGAACGACTCGCCGTCGGAGCTCTTCAGCGTTATCTTCCTTCCGGAC
GACATCGTTTCGATCGCGGCTGTGGTTACCCTAGAAACCTCTACAGAGAGAGAGATGAAATGATTGAGAGTAGGCCTGGCA