Detailed information on CNT30648504


BLAST search results

BLAST vs Swiss-Prot:
sp|P25856|G3PA1_ARATH, E-value = 7e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371585Rosa chinensisArabidopsis thaliana15.5228.984.96113forward
CNT30628639Rosa chinensisVigna unguiculata21.0221.5283.01153forward
CNT30196808Rosa chinensisPisum sativum10.5832.4992.2177forward
CNT30711851Rosa chinensisGlycine max21.0213.2783.66153forward
CNT3088037Rosa chinensisVigna radiata21.0211.3884.31153forward
CNT30541340Rosa chinensisBrassica napus2528.4480.77182forward
CNT30509382Rosa chinensisSolanum lycopersicum2528.4885.16182forward
CNT30146765Rosa chinensisMedicago truncatula15.9322.6686.21116forward
CNT3059480Rosa chinensisArabidopsis lyrata8.5225.8388.7162forward
CNT30231796Rosa chinensisAnanas comosus14.4227.8587.62105forward
CNT30622201Rosa chinensisCajanus cajan15.1149.5589.09110forward
CNT30356626Rosa chinensisLactuca sativa26.120.2179.47190forward
CNT30572796Rosa chinensisVitis vinifera25.8235.6183.51188forward
CNT30119544Rosa chinensisCitrus clementina50.4131.9181.74367forward
CNT30726265Rosa chinensisLupinus angustifolius20.3322.1982.43148forward

Expression of CNT30648504

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MPAPQEVPSNSSKPIYSHLQLRLRYPSLVSPVSSRLVLIHFIHNIFKLQLTASRSVYIIIKQALKYAVRMPFKLHCKSK*

>peptide 2 (94 aa)
VGGARSIANDGIIMTIEFSIDPDHIGRDVAFSGGSDEHLLGPCLYVFPGTLPINKHSSAFNHQVDPHVPARVVLEEVRRLLHASGVVDGNHIKR*

>peptide 3 (47 aa)
MAITSRGESLRPCQHLKKFLPILPNPFIATFSFASVIPLWYPPLVPA*

>peptide 4 (49 aa)
MSPFPGAVMSTFLAPASMCFPAPSLSTNTPVPSITRSIPMSLRASYLRR*

Sequence

>CNT30648504
CAGTTGGTGGTGCAAGAAGCATTGCTAATGATGGTATCATCATGACTATAGAGTTCAGCATTGACCCCGACCACATAGGTAGGGATGTCGCCTTTTCCGG
GGGCAGTGATGAGCACCTTCTTGGCCCCTGCCTCTATGTGTTTCCCGGCACCCTCCCTATCAACAAACACTCCAGTGCCTTCAATCACCAGGTCGATCCC
CATGTCCCTGCGCGCGTCGTACTTGAGGAGGTGAGACGCCTGCTTCACGCCTCCGGTGTCGTTGATGGCAATCACATCAAGAGGTGAGTCCTTGCGCCCA
TGCCAGCACCTCAAGAAGTTCCTTCCAATTCTTCCAAACCCATTTATAGCCACCTTCAGCTTCGCCTCCGTTATCCCTCTTTGGTATCCCCCGTTAGTTC
CCGCCTAGTTTTGATTCATTTCATTCACAATATTTTCAAGTTACAATTAACGGCATCTCGATCTGTATACATCATTATTAAACAAGCACTGAAATATGCA
GTACGTATGCCTTTTAAACTTCATTGTAAGTCCAAATAGGTAGCTGTTTGATTAGTCTCGCTGGTTGTTTTTAAGATCAAATAACAAACCATCATTAATT
AAGCAGTGTTTTCTCAAGTATTAATAATGACCATGGAAACGTTATCCATCTATCGCGAGTACTAGCTTTACCAGTAGTACTAGCTATTGGAATGTGAGCG
AAGTTGGAACTAATTAAGCAGTACTCAC