« Back to Rosa chinensis search


Detailed information on CNT30646760


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM4|PIP27_MAIZE, E-value = 3e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535437Rosa chinensisEucalyptus grandis35.0841.1882.31147forward
CNT30547793Rosa chinensisIpomoea triloba28.427.1781.51119forward
CNT30698271Rosa chinensisQuercus lobata36.0447.9480.79151forward
CNT3070604Rosa chinensisQuercus suber36.0435.280.79151forward
CNT3044720Rosa chinensisPrunus dulcis38.6624.5880.86162forward
CNT30569510Rosa chinensisActinidia chinensis10.521.1593.1844forward
CNT30218729Rosa chinensisKalanchoe fedtschenkoi19.0927.598580forward
CNT30572629Rosa chinensisVitis vinifera17.6627.8285.1474forward
CNT30704968Rosa chinensisPrunus avium41.2919.1886.13173forward
CNT30112022Rosa chinensisFicus carica39.1458.1681.71164forward

Expression of CNT30646760

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKIMPPKAQAIPKIPTPPQSSVSLWDLYPITVSTVM*

Sequence

>CNT30646760
CCTTCTTGTCGTCTAAGATAACGGCAGCTCCAAGACTTCTAGCGGGGTTGATGCCAGTGCCGCAGTGCAGTAAACGAGGATGAAGATCATGCCTCCAAAG
GCCCAGGCAATACCCAAAATCCCAACTCCGCCGCAGTCGTCGGTCTCGCTTTGGGACTTGTACCCGATCACAGTCAGCACAGTGATGTAGAGAAACAGAA
GGGTTGCTATGAACTCAGCTATGACAGCTCTGTAGAACGACCATTTGGTCAGCTCAACCGAGTCGAAGAGCGGAGCTGGAGGCGGGTCATGGTAGTCCTT
GGCTGAGAAGGAACCCCGCTCGGCAACTTCAACGTCCTTCGCCATTAAAGCTTAGACAAAAACACACAGTTTTGGAATGTTAGAGAAGAAGAGAGAGCTT
GGCTCTGGTTTATGGTGTG