« Back to Cannabis sativa search


Detailed information on CNT30646121


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K5P8|GL23_ORYSJ, E-value = 8e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102982Cannabis sativaOryza rufipogon5.7121.6787.6965forward
CNT30334464Cannabis sativaCynara cardunculus12.2920.9980.71140forward

Expression of CNT30646121

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGMSGLDPNTALAMVITPAFWLLKAAMAIVFP*

>peptide 2 (96 aa)
MFYLKLRLKIRNHSLVQLKSPGKNINGDVRLRSKYSISNGNNPCILATQGSNGYCIPMSNIFLVMNEPDWEHEHITLVKNFCNETIVWVRCDKAHF*

Sequence

>CNT30646121
TTTTTTTTGTATGCATGAATAATTTGGACTTTTTTTCTACCATATCTTTCAAACGAAATAAAACTAACAATTCAATTAATTAACCAGGACATACACAACC
ATATTGGATATGTTAAACTAAATAAAGAAAACATACATCACAAACATCTTAACCCTCAAACAGATACACACAATCACTTTTCTAAGTACTGATTTTAACA
CTCAGCATAAAATCTAAAAGAGATATGTTCTATTTAAAACTTAGACTGAAGATTCGCAACCACAGTCTTGTCCAATTGAAAAGCCCTGGCAAGAATATCA
ATGGGGATGTCAGGCTTAGATCCAAATACAGCATTAGCAATGGTAATAACCCCTGCATTTTGGCTACTCAAGGCAGCAATGGCTATTGTATTCCCATGAG
CAACATTTTTTTGGTAATGAATGAGCCCGACTGGGAACACGAACACATCACCCTTGTGAAGAATTTTTGTAACGAGACGATTGTCTGGGTTAGATGTGAC
AAAGCCCACTTCTAGACTTCCTTCTATAACAGTCAAAATCTCACTAGCCCTTGGATGTGTGTGTGGTGGGTTGATTCCCCATGGGGCATAGTCAATTCTA
GCTAGGGAAATTCCCAGTGTGTTGAGCCCAGGAATTTGAGTTACACCGACTGGAGTCACTCTAGAACCCAGTGCGTTTGATGTGTTTCCAGGTTTTTGTA
GCCCGCTAAAGAAGAAGTCTTGGGCCCCCACCATCTTTGGATCTTTACATACAATTCCATTCACTAGAACTGTCATTTGGAGGCTGCAACACAAAAATCC
TGAAGAGAACTAGGATCAGATGCCAAGGCAATAGAAGAAACAATGGCAAACAATGCCACCAATAATAGCAACACTCGAGAGCCCATTTGTTGTGCCCTAA
TTAATCTTTGTAATTTATAAGAAGTACTTAATAGAGAGTATAGACGAGAGAACTAGCTATGTATCTACTTATGTATGTAAATTGTTTAATTTTGAGTTGG
GCTTTGAGAAGCACAACGAGGTGGTTTTTATAGAGAGAACATGTGAGAGACATAATATGGAGATTAAGATATCAATTGAAGTAGTCTAGTCCAAGTCAAA
TAAATTAAGACATTGAGTTGATATATATTCAATATTTTC