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Detailed information on CNT30645456


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 5e-51

BLAST vs NONCODE:
NONGMAT000508, E-value = 2e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Cannabis sativaOryza sativa26.0844.3581.5200forward
CNT30671259Cannabis sativaSetaria viridis25.2947.4386.08194forward
CNT30523218Cannabis sativaSetaria italica31.5544.3283.88242forward
CNT30703567Cannabis sativaQuercus lobata36.7755.8486.88282forward
CNT30504865Cannabis sativaNicotiana attenuata24.6436.9180.95189forward
CNT30178072Cannabis sativaSecale cereale25.2935.7987.63194forward
CNT30299936Cannabis sativaTriticum aestivum26.8637.7387.38206forward
CNT30219776Cannabis sativaHordeum vulgare25.2946.0886.6194forward
CNT30394717Cannabis sativaTriticum turgidum26.8640.8787.38206forward
CNT30441099Cannabis sativaAegilops tauschii33.1249.2284.65254forward
CNT30252143Cannabis sativaAvena sativa33.1224.5684.65254forward
CNT30656490Cannabis sativaTriticum dicoccoides25.2931.3987.63194forward
CNT30450830Cannabis sativaSaccharum spontaneum30.6428.3884.68235forward
CNT30140217Cannabis sativaLolium perenne27.2581.9686.12209forward
CNT30687044Cannabis sativaTriticum urartu26.8620.2286.41206forward
CNT30348363Cannabis sativaEragrostis tef33.1245.683.86254forward
CNT30370989Cannabis sativaOryza glumipatula25.2931.0486.08194forward
CNT30147953Cannabis sativaBrachypodium distachyon25.5522.5586.22196forward
CNT30101647Cannabis sativaOryza rufipogon25.2920.8287.11194forward
CNT30496126Cannabis sativaDigitaria exilis25.2928.5385.05194forward

Expression of CNT30645456

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LFISNFLGLNIVNSIISLLNITIRRIQLNQFDLKSFNLNSKF*

>peptide 2 (53 aa)
MRPLIRLTPPRLAKRRIAGLVIPWMLSLRTLRCLFAPPFPKPFPPLPLPDIFK*

>peptide 3 (30 aa)
IYLKFLRLKHCQFNHIIIKYNNQKNTTQPI*

Sequence

>CNT30645456
CTATTTATCTCAAATTTCTTAGGCTTAAACATTGTCAATTCAATCATATCATTATTAAATATAACAATCAGAAGAATACAACTCAACCAATTTGATCTAA
AGTCCTTTAACTTAAATTCTAAATTTTGATTTTTGAATTGACCAAAAAACTATGGGATAGAAAATTGAAGATTAACAAACTAAACTATAATAATACAAGA
TGAAATATATTGATTGATCAGTTTCCAACTCTGTAAATCCGAATCGGAGTATTTAAATTTCAACTCATAACCCATAAAATCAATGTACAACAACTCTTGA
TTCTAATCAGAACATTTCCAAAAGCTTCATTCACATTGAAAACCCACAATACAATAATTATAATCCTAATAACACATTAACCCTAGAAAGATTGCAGAGA
CTACGGACTCATCAACCTCCGAATCCGTATAGAGTACGGCCTTGTCTCTTTAAAGCATAGACGACGTCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCT
CGGTGTAAGTAACGGCGTCACGGATGACGTTCTCTAGAAAGATCTTGAGTACGCCACGTGTCTCCTCGTAGATGAGACCGCTGATACGCTTAACACCGCC
ACGCCTGGCCAAACGGCGGATCGCCGGCTTGGTGATCCCTTGGATGTTGTCCCTGAGAACCTTGCGATGCCTCTTTGCTCCTCCCTTTCCCAAACCCTTT
CCTCCTTTGCCTCTTCCTGACATTTTCAAATGATCTTGGTTGTCTTCTTCTTCTTCTTCGTTTGAAG