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Detailed information on CNT30645368


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-56

BLAST vs NONCODE:
NONGMAT000508, E-value = 4e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375418Cannabis sativaArabidopsis thaliana34.4448.3188.6114forward
CNT30565712Cannabis sativaActinidia chinensis38.6742.8185.16128forward
CNT30553196Cannabis sativaOryza glaberrima42.325.0985.71140forward
CNT3059678Cannabis sativaArabidopsis lyrata53.7837.0184.83178forward
CNT30229571Cannabis sativaAnanas comosus42.934.4785.92142forward
CNT30596905Cannabis sativaOryza meridionalis42.323.0384.29140forward
CNT30414711Cannabis sativaPapaver somniferum37.7613.0880.8125forward
CNT30325970Cannabis sativaAsparagus officinalis32.3315.5183.18107forward
CNT30577582Cannabis sativaOryza barthii42.322.0184.29140forward
CNT30581397Cannabis sativaEchinochloa crusgalli42.323.8583.57140forward
CNT30117618Cannabis sativaOryza nivara42.331.1185140forward

Expression of CNT30645368

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRPLIRLTPPRLAKRRIAGLVIPWMLSLRTLRC

Sequence

>CNT30645368
TCCCTTTACAAATCTCAAAAACAATAATTATAAACACTAAAAAGATTAAAGCATTGACTGACTCACACTAATCAACCTCCGAATCCGTACAGAGTACGGC
CTTGTCTCTTCAAAGCATAGACGACGTCCATGGCGGTAACAGTCTTCCGGCGAGCGTGCTCAGTGTAAGTAACGGCGTCACGGATGACGTTCTCTAGAAA
GATCTTGAGTACGCCACGTGTCTCCTCGTAGATGAGACCGCTGATACGCTTAACACCGCCACGCCTGGCCAAACGGCGGATCGCCGGCTTGGTGATCCCT
TGGATGTTGTCCCTGAGAACCTTGCGATGCC