Detailed information on CNT30644153


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LE58|CHM1A_ARATH, E-value = 7e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513024Cannabis sativaJuglans regia21.7120.486.18152forward
CNT3085000Cannabis sativaVigna radiata37.719.480.3264forward
CNT30254428Cannabis sativaAvena sativa21.1427.5679.73148forward
CNT30669382Cannabis sativaTriticum dicoccoides22.4326.3479.62157forward
CNT30141866Cannabis sativaLolium perenne21.1424.3480.41148forward
CNT30705067Cannabis sativaPrunus avium40.5729.1382.04284forward
CNT30111719Cannabis sativaFicus carica41.1431.8686.11288forward

Expression of CNT30644153

Peptides detected in this lncRNA

>peptide 1 (83 aa)
LALSIFIHENSGAALSLSELRCPFRFSPHFIHLELQRRSLSRLIVGPSQPQNHLNVKDLLMVVILAWVSRRATTASRREDIRR*

>peptide 2 (49 aa)
MAFSVYIRVPSMLPFSMAFLILSFSDSSSFSHFRAWRCSDLAVNFNSMI*

>peptide 3 (53 aa)
WLCRYSFMRTLAPLSLSLNSGAHFVSALISSTLNSNAALFLVSSSVHLNLKIT*

>peptide 4 (50 aa)
MFHKNSSGKEKTNGGVEVNDMKLMLCLYYDSLVVEIAIFDGEHNQESGLY*

Sequence

>CNT30644153
TTTGGCTCTGTCGATATTCATTCATGAGAACTCTGGCGCCGCTCTCTCTCTCTCTGAACTCCGGTGCCCATTTCGTTTCAGCCCTCATTTCATCCACCTT
GAACTCCAACGCCGCTCTCTTTCTCGTCTCATCGTCGGTCCATCTCAACCTCAAAATCACTTGAATGTAAAGGACTTGTTAATGGTGGTCATCTTGGCTT
GGGTGTCTAGGCGAGCCACGACGGCATCGAGGCGCGAAGACATCCGGAGATAATTCATTTGCTCGGTTCGTTTACGAATGGCATTTTCGGTGTATATTCG
AGTGCCGTCGATGTTGCCTTTTTCCATGGCCTTCTTGATCTTGAGCTTCTCCGACTCCTCTTCTTTCTCGCATTTTCGGGCCTGGCGTTGCAGCGATTTG
GCTGTGAATTTCAACTCCATGATCTGATTAAGCAGCTTCTCAGTGTTCCCCATGGCGATCACTTCAGATAATTTCAAATTGGGATTCTAGGGTTTTTTCG
GGCAGAATGAAATTGCAGAGATGTTCCATAAAAACAGCAGTGGAAAAGAAAAAACGAACGGGGGAGTAGAGGTGAATGACATGAAATTGATGTTATGTTT
GTACTATGATTCTTTAGTGGTTGAGATTGCCATTTTTGATGGTGAGCATAACCAAGAGAGTGGATTATACTGATAAATCTCTCACAGTGTATGTTGCAGG