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Detailed information on CNT30632073


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1SU99|H2B3_MEDTR, E-value = 2e-41

BLAST vs NONCODE:
NONTPRT005013, E-value = 6e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674774Vigna unguiculataSetaria viridis16.6221.0887.2125forward
CNT30523103Vigna unguiculataSetaria italica22.2124.782.63167forward
CNT30315505Vigna unguiculataCorylus avellana22.6137.287.06170forward
CNT30702570Vigna unguiculataQuercus lobata17.0225.689.84128forward
CNT30618877Vigna unguiculataSesamum indicum22.7421.7385.38171forward
CNT30379403Vigna unguiculataManihot esculenta27.3936.6581.55206forward
CNT30526697Vigna unguiculataPhaseolus vulgaris28.3280.9996.71213forward
CNT30200173Vigna unguiculataPisum sativum27.1334.1789.22204forward
CNT3094085Vigna unguiculataSolanum tuberosum17.1525.5485.27129forward
CNT30180643Vigna unguiculataSecale cereale2522.7384.57188forward
CNT30307773Vigna unguiculataTriticum aestivum33.6438.7482.61253forward
CNT30220711Vigna unguiculataHordeum vulgare2518.1585.11188forward
CNT30565715Vigna unguiculataActinidia chinensis22.6121.6687.06170forward
CNT30586986Vigna unguiculataMusa acuminata21.2845.287.5160forward
CNT30510004Vigna unguiculataSolanum lycopersicum10.926.8990.2482forward
CNT30552407Vigna unguiculataOryza glaberrima2527.0983.51188forward
CNT30435305Vigna unguiculataAegilops tauschii22.6121.6684.71170forward
CNT30241394Vigna unguiculataAvena sativa24.635.2483.78185forward
CNT30668428Vigna unguiculataTriticum dicoccoides2533.6384.04188forward
CNT30457159Vigna unguiculataSaccharum spontaneum25.1322.6683.6189forward
CNT30131583Vigna unguiculataLolium perenne23.842.2283.8179forward
CNT303693Vigna unguiculataZea mays15.8234.4986.55119forward
CNT30610418Vigna unguiculataGossypium raimondii25.2719.7584.21190forward
CNT30205622Vigna unguiculataHelianthus annuus11.8432.9684.2789forward
CNT30129800Vigna unguiculataCorymbia citriodora2523.3587.23188forward
CNT30684130Vigna unguiculataTriticum urartu2525.9382.98188forward
CNT30722188Vigna unguiculataTriticum spelta2527.5384.04188forward
CNT30346527Vigna unguiculataEragrostis tef14.2350.7186.92107forward
CNT30359864Vigna unguiculataLactuca sativa16.6230.1988125forward
CNT30570929Vigna unguiculataVitis vinifera2528.0286.7188forward
CNT3052765Vigna unguiculataAmborella trichopoda16.6224.6187.2125forward
CNT3024639Vigna unguiculataPopulus trichocarpa17.2931.5586.15130forward
CNT30574682Vigna unguiculataOryza barthii22.6124.8584.12170forward
CNT30174435Vigna unguiculataVigna angularis28.0631.4995.26211forward
CNT30557628Vigna unguiculataPanicum hallii15.8221.3687.39119forward
CNT30724478Vigna unguiculataLupinus angustifolius27.7934.6684.21209forward
CNT3065708Vigna unguiculataSelaginella moellendorffii15.8234.2985.71119forward

Expression of CNT30632073

Peptides detected in this lncRNA

>peptide 1 (75 aa)
INHFNTKRLCTIPFFFQFKLKLKPYCFKSRIRTLDPIHTTKNQKRPRKQNRNMIIFSRTSELGNSLGTLRDSMFG*

>peptide 2 (80 aa)
MSPHSSCFSSSSYRHQRLLPWEASFLPSASSPPEPCHLRWTSSPLQASSPLASSLPLVPYLKQTLVLGRELGFRIGIQKA*

Sequence

>CNT30632073
AAATTAATCATTTCAATACAAAGAGGCTGTGCACAATCCCTTTTTTTTTTCAATTTAAGCTAAAACTAAAACCCTACTGTTTCAAATCTAGGATTAGAAC
ATTAGATCCAATACATACAACTAAGAACCAGAAGAGACCAAGAAAACAGAACAGAAATATGATAATTTTTTCAAGAACTAGTGAACTTGGTAACAGCCTT
GGTACCCTCAGAGACAGCATGTTTGGCTAATTCTCCAGGCAACACAAGTCTGACCGCAGTCTGGATTTCCCTTGAAGTGATGGTGGGTTTCTTGTTGTAG
CGGGCAACACAAGTCTGACCGCAGTCTGGATTTCCCTTGAAGTGATGGTGGGTTTCTTGTTGTAGCGGGCAAGTCTAGAAGATTCCTGGGCAAGCTTCTC
AAAGATGTCATTGATGAAACTGTTCATGATACCCATGGCCTTGCTGGAGATACCAATGTCGGGGTGAACCTGCTTCAGAACCTTGAAGATGTAGATCTTG
TATGTCTCCACACTCTTCTTGTTTCTCTTCTTCTTCTTATCGCCACCAGCGCCTCCTTCCTTGGGAAGCTTCTTTCCTGCCTTCGGCTTCTTCTCCGCCG
GAGCCTTGTCACCTACGGTGGACTTCTTCTCCTCTGCAGGCTTCTTCTCCGCTGGCTTCTTCTCTGCCTTTGGTGCCATATCTAAAGCAGACTTTGGTGC
TGGGAAGAGAATTAGGGTTTAGAATTGGGATTCAGAAAGCTTGATGGAATAG