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Detailed information on CNT30631438


BLAST search results

BLAST vs Swiss-Prot:
sp|P35100|CLPC_PEA, E-value = 2e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Vigna unguiculataOryza sativa40.4829.7882.84268forward
CNT30404662Vigna unguiculataBeta vulgaris37.0131.3381.22245forward
CNT30487971Vigna unguiculataOlea europaea53.3267.8882.15353forward
CNT30709327Vigna unguiculataGlycine max20.5414.4494.12136forward
CNT30122306Vigna unguiculataPhyscomitrium patens17.9841.3284.03119forward
CNT30171906Vigna unguiculataTrifolium pratense63.1447.8889418forward
CNT30144776Vigna unguiculataMedicago truncatula35.517.993.19235forward
CNT30254596Vigna unguiculataAvena sativa46.5323.2382.79308forward
CNT30658759Vigna unguiculataTriticum dicoccoides22.8125.5184.11151forward
CNT30311914Vigna unguiculataCamelina sativa38.6741.4280.86256forward
CNT3062430Vigna unguiculataArabidopsis lyrata38.8222.2981.32257forward
CNT3017684Vigna unguiculataZea mays16.6226.786.36110forward
CNT30717839Vigna unguiculataMalus domestica golden52.8768.982.29350forward
CNT30625756Vigna unguiculataDaucus carota25.3834.6484.52168forward
CNT30354596Vigna unguiculataLactuca sativa33.532080.63222forward
CNT3053264Vigna unguiculataAmborella trichopoda26.7428.2784.75177forward
CNT30328300Vigna unguiculataAsparagus officinalis9.3720.8187.162forward
CNT3037990Vigna unguiculataCucumis melo17.3738.5988.7115forward
CNT30150466Vigna unguiculataBrachypodium distachyon32.0262.5482.08212forward
CNT30116632Vigna unguiculataOryza nivara16.9229.2485.71112forward
CNT30558331Vigna unguiculataPanicum hallii26.5921.2681.82176forward

Expression of CNT30631438

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSAISFTSSFVSCLKTIISSNLFKNSGLKYCFSSSVTKLLILL*

>peptide 2 (58 aa)
ASVEDSGAPLLPLSTITLPSESTSTITESPSLISLASIFSACCLPKVALIALLKGLAP*

Sequence

>CNT30631438
TTGCCTCTGTTGAGGACTCGGGGGCTCCACTGCTACCATTGAGCACAATCACGTTACCATCAGAATCAACATCCACTATAACAGAGTCACCCTCTTTGAT
CTCTCTTGCAAGCATCTTCTCTGCATGCTGTCTTCCAAAAGTCGCATTAATAGCTCTTCTTAAAGGTCTGGCTCCGTAACTAGGATTATAACTTCCTCCA
CCACTCTGTCCTAAATCTTTCTGTTACTTGAAGTTCAATATCTTTCACCTTCAGTCTAGCAAACACCTCATTGAGCATTATGTCAGCAATCTCCTTCACC
TCCAGTTTTGTGAGTTGCCTGAAGACAATCATTTCATCCAACCTATTCAAAAATTCTGGCCTAAAGTATTGCTTTAGCTCCTCAGTCACCAAGCTCTTGA
TTCTATTATAACTGCTGTCCTTCTCATCATAATCCAGATCAAATCCAATTCGACGGCCTCCTTTCTCAATAACACTGCTTCCAACATTTGATGTCATTAT
AAGAAGTGTGTTCTTGAAATCCACAGTTCTTCCTTACTGTCAGACGACGTCGAACTGCCTCGGTCAACTGCCCACCTTCAGTGTAACCAACATATCCAGG
AGGTGAACCAATAAGTTTGGAAACTGTGTGTCTTTCCATAAACTCACTCATGTCAAGTCGTA