Detailed information on CNT30628899


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30171495Vigna unguiculataTrifolium pratense43.1859.8185.13491forward

Expression of CNT30628899

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MYYFDVKYNLRKLIHNNNNNNNKIIELGQCYIVTL*

>peptide 2 (45 aa)
MVSPGPKPNKTPHSSPSPVVLSPFSTDFLLISSKMKSTHALDIFP*

>peptide 3 (42 aa)
MAPSLSGAMVCAVQTSSNNGFSICGIGSEPTMTAAAPSPNSA*

>peptide 4 (51 aa)
MSTPLVVQKIKCVIFDFGCPHSFMAFTAASFPSFGTSTTTISCLASKEGAM*

>peptide 5 (45 aa)
MLYCDTVKNNRLNGKSRSKTKQDTPFKSFTCGFESIFNRFPPHFI*

Sequence

>CNT30628899
TCACAATGTATCATAAGTTATTAATTAGTCTCAAAAGCCCCGAACCATGTATTACTTTGATGTAAAATACAACCTTCGAAAATTAATACATAATAATAAT
AATAACAACAATAAAATAATAGAGTTGGGACAATGTTATATTGTGACACTGTGAAGAACAACCGTCTCAATGGTAAGTCCAGGTCCAAAACCAAACAAGA
CACCCCATTCAAGTCCTTCACCTGTGGTTTTGAGTCCATTTTCAACAGATTTCCTCCTCATTTCATCTAAAATGAAAAGCACACATGCACTTGACATATT
TCCATAGTCACTCAGAACATCTCTAGTGGCCTTCATCTTTTCAGGTTTGAGACCCAACTTTTGCTCAACTTGGTCAAGAATTGTAGGGCCACCAGGATGT
GCAATCCAAAAGATGGAGTTGTAATCAGAGATGTTCAATGGATCAAAGGCCTCGGAAAGTGCCTTTCCAATGTTCTTTGAGACAATCCCAGGAACATCCT
TAAGAAGGTGAAAGGTGAGTCCAACTTCTCGAAGGTGGCCATCAATGGCACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACAAGCTCAAACAA
TGGCTTCTCAATTTGTGGAATTGGGTCAGAACCAACAATGACTGCAGCTGCTCCATCTCCAAACAGTGCTTGACCCACAAGACTGTCTAGGTGAGTTTCA
CTTGGGCCACGGAAGGTGACTGCAGTGATCTCAGAACACACGACAAGCACACGGGCACCCTTATTGTTCTCGGCTAAATCCTTGGCCAATCGAAGAACTG
TGCCTCCGGCAAAGCACCCCTGTTGGTACATCATGTACCTCTTGACATAGGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGCATGTC
GACACCACTAGTGGTGCAAAAAATCAAGTGTGTAATCTTTGACTTTGGCTGTCCCCACTCCTTTATGGCCTTCACTGCAGCATCTTTCCCTAGCTTTGGT
ACCTCTACCACAACTATATCTTGCCTCGCATCCAAAGAAGGTGCCATGTAAGCACACATGTTGGGATTCTCCTTCAGGACCTCCTCTGTCACGTGCATGT
ATCTCTTCTTGATCATCGACTTGTCGCCTGGAACATC