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Detailed information on CNT30628805


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39255|SKP1A_ARATH, E-value = 7e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Vigna unguiculataSetaria viridis17.7938.4687.3795forward
CNT30535942Vigna unguiculataEucalyptus grandis30.5234.9882.21163forward
CNT30315801Vigna unguiculataCorylus avellana28.0918.0990.67150forward
CNT30516841Vigna unguiculataJuglans regia28.4618.7787.5152forward
CNT30500911Vigna unguiculataCoffea canephora21.1621.8185.84113forward
CNT30277964Vigna unguiculataChenopodium quinoa30.7127.3880.49164forward
CNT30380944Vigna unguiculataManihot esculenta30.1511.5984.47161forward
CNT30493928Vigna unguiculataOlea europaea26.9720.2286.11144forward
CNT3097013Vigna unguiculataSolanum tuberosum23.9728.8385.94128forward
CNT30303844Vigna unguiculataTriticum aestivum10.322.2790.9155forward
CNT30567592Vigna unguiculataActinidia chinensis29.7811.0183.02159forward
CNT30666847Vigna unguiculataTriticum dicoccoides10.322.0990.9155forward
CNT3059890Vigna unguiculataArabidopsis lyrata30.5222.6780.98163forward
CNT30259882Vigna unguiculataBrassica rapa30.3442.4182.72162forward
CNT30136788Vigna unguiculataLolium perenne20.619.485.45110forward
CNT30686076Vigna unguiculataTriticum urartu14.2327.0586.8476forward
CNT30112966Vigna unguiculataFicus carica37.2729.781.41199forward

Expression of CNT30628805

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MLKVLRISSGVFPLIMSATVWHVRSSRLLMFRMRSKSVAWSTLTKSASQALRSSSEGLSSGLAASTCFLQYSITLARILLVTFGRGMPLSAQSS

Sequence

>CNT30628805
CTCTTAACGTTCATGAAGGAAGATAATTCTGACTCGAGAACGCAGTCAACATAATTAGTCTGAAATAGAAAACAAACAAGTATATAGCATAGGTAAATCT
ACAAGGAAGATCTTTGAAAAACAGACAAGCATAGCATAAAACCACATGGCAGATCTTTGATTCAGATTTTTTGAGCTTAACAAAATCATTCAAATGCCCA
TTGATTTTCCCGACGAACTTCCTCTTCTTCCTCAGGGGTGAAGTCATTCTTAATGTTAAAGGTCTTGCGAATTTCCTCTGGAGTCTTCCCCTTGATCATG
TCTGCTACAGTCTGGCATGTAAGATCCAGCAGGCTCTTGATGTTCAGGATGAGATCGAAGAGCGTGGCTTGGTCGACCTTGACGAAATCAGCGTCCCAGG
CCTTGAGATCTTCCTCAGAAGGTTTGTCGTCGGGATTGGCGGCATCGACGTGTTTTTTGCAGTACTCGATAACTTTGGCGAGGATCTTGCTGGTAACGTT
TGGGAGAGGGATGCCGCTGTCGGCGCAGTCGTCC