CANTATAdb - search

Detailed information on CNT30627183

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LHK3|OST4A_ARATH, E-value = 2e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30282360	Daucus carota	Chenopodium quinoa	10.79	31.22	98.44	64	reverse complement
CNT30205883	Daucus carota	Helianthus annuus	12.14	32	98.61	72	forward

Expression of CNT30627183

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIDDQDLGFIANFLGIFIFGLVIAYHYVTADPKYEAN*

>peptide 2 (32 aa)
GCSLVVRIPRCGRGDLGSNPSSHTFFPILRPF*

>peptide 3 (29 aa)
MQQFISVTCFLHVEVTLSWNNAGIYYIKC*

Sequence

>CNT30627183
GTGGCTGTAGTTTAGTGGTTAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAGCAGCCACACTTTTTTTCCCATTTTGCGACCCTTTTA
GAAGTGTAGGGTTTTTAAAGAGCCCAATACTCTTTTCTATTTGCTTTTGTTTTTTTTGGAAGACGCACAAGTTGAAGATCAACAAAACCTAGAAAAGAAG
TTGAAGATTGACTAAAGACAGCAAAGATGATAGACGATCAAGACTTGGGTTTCATAGCCAACTTTCTTGGAATCTTTATATTTGGTTTGGTAATTGCTTA
CCATTATGTGACAGCTGACCCGAAGTATGAGGCCAACTAGATCCAAGATGCATGCAACAGTTTATCTCAGTTACATGTTTCCTTCATGTTGAAGTAACAT
TAAGTTGGAACAATGCTGGCATTTACTATATTAAATGTTAGCAGTTTTTATGCTAGACATTTCATTTACATTTTGTTAAAGCTTAATTAAAAAGTTGCAC
CACAAATTCTGTCTTTGTTAATCAAAATCCCACCTGAATGCTGTGGAAGACGCAATCTGTTTTTTGACTATGATGCTTTCGATTTTTAAACAC