« Back to Arabidopsis lyrata search


Detailed information on CNT3062430


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Arabidopsis lyrataOryza sativa30.3638.8978.29350forward
CNT30672484Arabidopsis lyrataSetaria viridis18.9156.3379.36218forward
CNT30272384Arabidopsis lyrataChenopodium quinoa35.5638.3582.93410forward
CNT30404760Arabidopsis lyrataBeta vulgaris25.6734.0680.41296forward
CNT30631438Arabidopsis lyrataVigna unguiculata22.2938.8281.32257forward
CNT30487971Arabidopsis lyrataOlea europaea26.9759.8180.39311forward
CNT30709327Arabidopsis lyrataGlycine max42.2451.780.08487forward
CNT30300179Arabidopsis lyrataTriticum aestivum30.3629.9981.43350forward
CNT30393350Arabidopsis lyrataTriticum turgidum32.9637.9679.21380forward
CNT30561426Arabidopsis lyrataActinidia chinensis15.5224.2587.71179forward
CNT30171906Arabidopsis lyrataTrifolium pratense31.9242.1579.35368forward
CNT30144776Arabidopsis lyrataMedicago truncatula28.6225.1382.42330forward
CNT30441093Arabidopsis lyrataAegilops tauschii21.7749.4179.28251forward
CNT30658759Arabidopsis lyrataTriticum dicoccoides20.4739.8679.66236forward
CNT30311914Arabidopsis lyrataCamelina sativa47.78992.55550forward
CNT303614Arabidopsis lyrataZea mays14.6629.6582.25169forward
CNT30207996Arabidopsis lyrataHelianthus annuus20.3852.8183.4235forward
CNT30717839Arabidopsis lyrataMalus domestica golden25.3357.4882.88292forward
CNT30685178Arabidopsis lyrataTriticum urartu23.4233.2580.37270forward
CNT30354596Arabidopsis lyrataLactuca sativa21.7722.6184.06251forward
CNT3053264Arabidopsis lyrataAmborella trichopoda19.2535.4678.83222forward
CNT30328300Arabidopsis lyrataAsparagus officinalis12.7549.3380.95147forward
CNT3037990Arabidopsis lyrataCucumis melo22.0385.2381.1254forward
CNT30150466Arabidopsis lyrataBrachypodium distachyon13.4445.7283.87155forward
CNT30101573Arabidopsis lyrataOryza rufipogon17.6123.9778.82203forward
CNT30498115Arabidopsis lyrataDigitaria exilis24.1135.0677.7278forward
CNT30116632Arabidopsis lyrataOryza nivara6.8520.6384.8179forward

Expression of CNT3062430

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSAISFTSSFVSCLNTIISSSLFKNSGLKYCFSSSVTRLLILL*

>peptide 2 (36 aa)
MIRSVFLKSTVLPLLSVNLDGLFRSHRIERRCKGDA*

>peptide 3 (43 aa)
QISQFITFSCHTSFRGQSKRRETHFAFFLFKQRGENLPALPRK*

>peptide 4 (78 aa)
MKLAIGRLGFLSPTRARRMARLMAFTASSWPMIRLWRVSSILRRRSDSSVDTFSTGIPVHEDTMCWMSDSVTIGPSSPV

Sequence

>CNT3062430
CCCAAATATCTCAATTCATAACCTTCTCTTGCCATACTTCATTTAGGGGCCAAAGCAAAAGAAGAGAAACGCACTTTGCCTTTTTTTTATTCAAGCAACG
GGGAGAGAATCTTCCTGCTCTTCCAAGGAAGTAGTTGGAGTGCCACTTCCACCATTTAGCACTGTGACGTTGCCTTCAGCGTCAACGTCCACAATCACCG
AGTCTCCTTCTTTAATCTCTCTCGCAAGCATTTTCTCTGCCATACTATCCTCTAAAAGCCTCATGATGGCTCTTCTCAACGGTCTTGCTCCGTAGCTCGG
GTTATAACCTTCGTCTACTACTCTCTCTTTGAACCTCTCAGTCACCTGGAGCTCGATCTCCTTCTTCTTTAACCTCTCGAACACTTCCTTCAACAGTATG
TCAGCAATTTCTTTCACTTCCAGTTTTGTTAGCTGTCTGAATACAATCATTTCGTCTAGCCTGTTCAAGAACTCTGGTCTGAAGTACTGTTTCAGCTCCT
CGGTCACAAGGCTCTTGATTCTGTTGTAACTGCTGTCTTTCTCGTCGTAGTCTAAGTCGAACCCGATACGTCTTCCTCCTTTTTCGATCACGCTGCTTCC
GACGTTTGATGTCATGATAAGAAGTGTGTTTTTGAAGTCAACTGTTCTTCCTTTGCTGTCTGTTAATCTGGATGGGCTTTTTCGATCTCATCGAATAGAA
CGACGGTGTAAGGGCGACGCCTAACTGCTTCTGTTAGCTGACCTCCTTCGGTGTACCCGACGTATCCAGGAGGTGAACCGATGAGTTTGGAGACGGTGTG
CCTTTCCATGAACTCACTCATATCTAGACGAATCATGGCTTCTTCAGATCCGAAGTAGTAAGCTGCCAAAGCTTTGGCAAGCTCGGATTTCCCAACACCG
GTTGGACCCGAGAATATGAAACTAGCTATTGGACGGTTAGGGTTCTTGAGTCCAACACGTGCACGGCGAATGGCTCGGCTTATGGCTTTCACAGCTTCGT
CTTGGCCTATGATACGTTTGTGGAGGGTTTCTTCCATCTTGAGGAGGCGATCAGACTCATCAGTTGATACTTTCTCTACGGGAATACCAGTCCATGAAGA
TACAATGTGTTGGATGTCTGACTCCGTGACCATAGGACCTTCCTCACCAGTCT