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Detailed information on CNT3062229


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531266Arabidopsis lyrataEucalyptus grandis21.7423.6485100forward
CNT30404916Arabidopsis lyrataBeta vulgaris18.0420.4989.1683forward
CNT30525480Arabidopsis lyrataPhaseolus vulgaris23.044.9682.08106forward
CNT30145515Arabidopsis lyrataMedicago truncatula14.1326.5387.6965forward
CNT30436604Arabidopsis lyrataAegilops tauschii22.3912.8187.38103forward
CNT30570969Arabidopsis lyrataVitis vinifera13.2622.1886.8961forward
CNT30704968Arabidopsis lyrataPrunus avium23.0411.7582.08106forward
CNT30120694Arabidopsis lyrataCitrus clementina23.0443.4482.08106forward

Expression of CNT3062229

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSPSLLVVVDNSSTKASCWVDTSSGNGDSSQMHHEHS

Sequence

>CNT3062229
TAGTTGTAATACATTATACATTAAAAGAATCTTGTGTAGTTGTGAAGAATGATAAATTTAATTTGGATTGTTCGAAAACGTGAAGGAATGCTCTCGAACT
AGATGGATACAGAGAAAACATAAAAATTTTAACTTCTAAGGAGAAACCAAAGGCAAATGATCCACAAAGACAAACCAAAACTAAAAAAGAAAGAAACAGA
AGTCACTGAGCCATTTCATAATTAACATCAATCCACCATCTCTCGCATTACACACAAAAGAACAACAAATAATAATAAAACATATAAATCTTAAAGTTGT
TTCTTCACATATCTTTTAATCTCTCATTAATTGGTTGCGTTGCTTCGGAATGAGCCCAAGCCTTCTCGTTGTTGTAGATAACAGCAGCACCAAAGCTTCT
TGCTGGGTTGATACCAGTTCCGGTAATGGGGATAGTAGCCAAATGCACCATGAACACAGC