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Detailed information on CNT30619778

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674589	Cajanus cajan	Setaria viridis	18.73	53.45	89.52	124	forward
CNT30523142	Cajanus cajan	Setaria italica	18.73	23.85	89.52	124	forward
CNT30315505	Cajanus cajan	Corylus avellana	19.64	28.45	91.54	130	forward
CNT30518328	Cajanus cajan	Juglans regia	19.64	25.1	89.23	130	forward
CNT30702570	Cajanus cajan	Quercus lobata	37.76	50	86.4	250	forward
CNT30379403	Cajanus cajan	Manihot esculenta	19.34	22.78	86.72	128	forward
CNT30526697	Cajanus cajan	Phaseolus vulgaris	19.49	49.05	89.15	129	forward
CNT30630598	Cajanus cajan	Vigna unguiculata	17.52	20.83	87.93	116	forward
CNT30196132	Cajanus cajan	Pisum sativum	17.98	25.11	89.92	119	forward
CNT30163372	Cajanus cajan	Pistacia vera	19.49	22.4	82.17	129	forward
CNT3094085	Cajanus cajan	Solanum tuberosum	18.88	24.75	88	125	forward
CNT30186751	Cajanus cajan	Secale cereale	14.5	20.82	87.5	96	forward
CNT30304304	Cajanus cajan	Triticum aestivum	18.73	24.7	89.52	124	forward
CNT30224080	Cajanus cajan	Hordeum vulgare	15.26	29.28	87.13	101	forward
CNT30395424	Cajanus cajan	Triticum turgidum	18.73	25.78	89.52	124	forward
CNT30586986	Cajanus cajan	Musa acuminata	18.43	34.46	86.89	122	forward
CNT30510004	Cajanus cajan	Solanum lycopersicum	12.84	27.87	87.06	85	forward
CNT30553165	Cajanus cajan	Oryza glaberrima	18.73	26.96	89.52	124	forward
CNT30171046	Cajanus cajan	Trifolium pratense	18.58	34.65	86.18	123	forward
CNT30434919	Cajanus cajan	Aegilops tauschii	18.73	20.43	88.71	124	forward
CNT30241394	Cajanus cajan	Avena sativa	18.28	23.05	88.43	121	forward
CNT30657146	Cajanus cajan	Triticum dicoccoides	18.73	21.87	89.52	124	forward
CNT30447591	Cajanus cajan	Saccharum spontaneum	18.73	22.75	89.52	124	forward
CNT30136307	Cajanus cajan	Lolium perenne	18.13	20.2	88.33	120	forward
CNT303693	Cajanus cajan	Zea mays	18.58	35.65	88.62	123	forward
CNT30606042	Cajanus cajan	Gossypium raimondii	19.64	42.62	90	130	forward
CNT30231835	Cajanus cajan	Ananas comosus	36.56	37.23	82.64	242	forward
CNT30205622	Cajanus cajan	Helianthus annuus	14.2	34.81	86.17	94	forward
CNT30686967	Cajanus cajan	Triticum urartu	18.73	21.34	89.52	124	forward
CNT30719869	Cajanus cajan	Triticum spelta	18.73	21.72	88.71	124	forward
CNT30346527	Cajanus cajan	Eragrostis tef	16.62	52.13	87.27	110	forward
CNT30360466	Cajanus cajan	Lactuca sativa	17.52	27.55	87.93	116	forward
CNT30369945	Cajanus cajan	Oryza glumipatula	37.31	35.49	81.78	247	forward
CNT3052765	Cajanus cajan	Amborella trichopoda	37.31	48.62	82.59	247	forward
CNT3024772	Cajanus cajan	Populus trichocarpa	19.18	21.42	85.83	127	forward
CNT30319826	Cajanus cajan	Asparagus officinalis	35.65	40.14	82.2	236	forward
CNT30100801	Cajanus cajan	Oryza rufipogon	19.64	20.06	89.23	130	forward
CNT30577496	Cajanus cajan	Oryza barthii	18.73	23.22	87.1	124	forward
CNT30557628	Cajanus cajan	Panicum hallii	18.43	21.9	88.52	122	forward
CNT3065708	Cajanus cajan	Selaginella moellendorffii	18.28	34.87	89.26	121	forward
CNT30114697	Cajanus cajan	Eutrema salsugineum	19.79	21.37	87.02	131	forward

Expression of CNT30619778

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKLFMIPMALLEMPMSGCTCLRTLKM*

>peptide 2 (52 aa)
MHLLEDLEDVDLVGLHALLRALLLLVAASFLRDLLLCLRLLLRWRLLRPRLLL

Sequence

>CNT30619778
GAAGAAATATTCAAAAACAAAAGCTAGTTTAACCAATGTTCATCAAATTGCGCAAAACAATAGAAGAGTTTAAAAATTGATTTAGGCAAAATTCCACCCC
TCATCTAGTCACACATTTACAGAGTCAAACTAACAACCCTAACCACATGGCAATAGCACAATTGATAAACACGACATATAATTATTGAAACGAAACATTC
TTCCATTACCAACAACTATCCATCCGATTACATCTACAATCTATTTAAAAAGAAAAAAGAAAATAAAATGCACATGAAACCCTAGATCCGATTAAAATCC
AAATTCAAGAGCTAGTGAATTTGGTGACAGCCTTGGTGCCTTCGGAGACGGCGTGTTTGGCAAGCTCCCCAGGCAGCACCAAACGCACAGCGGTCTGAAT
CTCCCGAGAAGTAATAGTTGGCTTCCTGTGCGAGCTTCTCGAAGATGTCGTTAATGAAGCTGTTCATGATCCCCATGGCCTTGCTGGAAATGCCGATGTC
AGGATGCACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCCACGCTCTTCTTCGTGCGCTTCTTCTTCTTGTCGCTGCCTCCTTCCTTCGGG
ATCTTCTTCTCTGCCTTCGGCTTCTTCTCCGCTGGAGACTTCTCCGCCCCCGGCTTCTTCTC