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Detailed information on CNT3061946


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FID0|GL114_ARATH, E-value = 2e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377507Arabidopsis lyrataArabidopsis thaliana67.5220.1586.08237forward
CNT3045720Arabidopsis lyrataPrunus dulcis22.221384.6278forward
CNT30567662Arabidopsis lyrataActinidia chinensis17.6620.5388.7162forward
CNT30241183Arabidopsis lyrataAvena sativa25.9313.4485.7191forward
CNT30140763Arabidopsis lyrataLolium perenne18.5223.2186.1565forward
CNT30573105Arabidopsis lyrataVitis vinifera21.9412.7385.7177forward
CNT30706383Arabidopsis lyrataPrunus avium22.7912.748580forward

Expression of CNT3061946

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRTKDIPNVFNPGIWSTLTVVTLDLTLLVVFPALLRPAKKKSSAFACF

>peptide 2 (33 aa)
GVFPIFTWKWIIPMGNTNTSPGFSTLANKRLLS*

>peptide 3 (86 aa)
GSSRYSLGNGSFQWGTRTRRRGSALWRINGYCLDWKRQNLHIMFPRQEQGSQWHEGACEAGFVHKAHSLCGPRIFPMCLTRESGRH*

Sequence

>CNT3061946
GGGGTCTTCCCGATATTCACTTGGAAATGGATCATTCCAATGGGGAACACGAACACGTCGCCGGGGTTCAGCACTTTGGCGAATAAACGGTTATTGTCTT
GATTGGAAGAGACAAAACCTACATATAATGTTCCCTCGACAAGAACAAGGATCTCAGTGGCACGAGGGTGCGTGTGAGGCGGGTTTTGTCCATAAGGCGC
ATAGTCTATGCGGACCAAGGATATTCCCAATGTGTTTAACCCGGGAATCTGGTCGACATTGACCGTTGTCACGTTGGATTTGACTCTATTGGTAGTGTTT
CCTGCCTTGTTGAGGCCTGCAAAGAAGAAATCTTCTGCCTTCGCTTGCTTC