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Detailed information on CNT30618877


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SI96|H2B3_ARATH, E-value = 2e-56

BLAST vs NONCODE:
NONGMAT000269, E-value = 5e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Sesamum indicumOryza sativa25.7932.0783.25203forward
CNT30675682Sesamum indicumSetaria viridis25.1643.7185.86198forward
CNT30522940Sesamum indicumSetaria italica24.427.2783.85192forward
CNT30315505Sesamum indicumCorylus avellana32.6656.2485.6257forward
CNT30518203Sesamum indicumJuglans regia46.6341.1985.56367forward
CNT30702570Sesamum indicumQuercus lobata28.0844.289.59221forward
CNT30379403Sesamum indicumManihot esculenta47.0165.8481.89370forward
CNT30526608Sesamum indicumPhaseolus vulgaris34.9433.9983.27275forward
CNT30632073Sesamum indicumVigna unguiculata34.5636.1783.09272forward
CNT30200086Sesamum indicumPisum sativum27.740.987.61218forward
CNT30163367Sesamum indicumPistacia vera27.726.1785.32218forward
CNT3094085Sesamum indicumSolanum tuberosum16.2625.3584.38128forward
CNT30186751Sesamum indicumSecale cereale20.7135.3682.21163forward
CNT30220727Sesamum indicumHordeum vulgare35.0735.3881.16276forward
CNT30395424Sesamum indicumTriticum turgidum33.6755.0980.75265forward
CNT30565715Sesamum indicumActinidia chinensis39.0139.1186.97307forward
CNT30586986Sesamum indicumMusa acuminata33.875.1484.59266forward
CNT30552027Sesamum indicumOryza glaberrima33.5548.9881.44264forward
CNT30171046Sesamum indicumTrifolium pratense34.5676.6283.46272forward
CNT30434666Sesamum indicumAegilops tauschii33.6736.181.13265forward
CNT30246240Sesamum indicumAvena sativa15.8825.9987.2125forward
CNT30660053Sesamum indicumTriticum dicoccoides33.5539.8281.44264forward
CNT30597299Sesamum indicumFraxinus excelsior52.8675.7785.82416forward
CNT30447591Sesamum indicumSaccharum spontaneum35.4551.1982.44279forward
CNT30130711Sesamum indicumLolium perenne33.5538.8282.58264forward
CNT303693Sesamum indicumZea mays15.8836.2388125forward
CNT30610418Sesamum indicumGossypium raimondii38.7531.784.26305forward
CNT30205622Sesamum indicumHelianthus annuus25.0372.9682.74197forward
CNT30684130Sesamum indicumTriticum urartu35.0738.0781.88276forward
CNT30346527Sesamum indicumEragrostis tef22.4983.8984.18177forward
CNT30369169Sesamum indicumOryza glumipatula33.4245.980.99263forward
CNT30327286Sesamum indicumAsparagus officinalis35.4530.8684.95279forward
CNT3099564Sesamum indicumOryza rufipogon5.9723.0495.7447forward
CNT30577496Sesamum indicumOryza barthii14.3621.1688.5113forward
CNT30496069Sesamum indicumDigitaria exilis35.0734.5980.43276forward
CNT30557628Sesamum indicumPanicum hallii14.4920.4788.6114forward
CNT30114697Sesamum indicumEutrema salsugineum48.7962.6482.29384forward

Expression of CNT30618877

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKLFMIPMALLEIPMSGWTCFSTLKM*

Sequence

>CNT30618877
TAAATTACTAAACATCACTCTTTAAATCCAATTGTTAGAGATATTGTGAAGCTTTAGTTACGCATTCCAGTAGATCAGCAGTGGTGCTACACGGGATGAT
GACAAATTCCAGAAATTAAGGAATTTCCATTGATTGAATTTGATTCACAACAACAAATTCTGCACTCTTTACATCAAAATGACAAAAAGGAACCCTAAAC
CTTAGCCCTAATTCGGAAACCCTAATTTCAGAGCTACACATAAAGCAATTCAAGAGCTGGTGAACTTGGTCACAGCCTTGGTTCCTTCAGAGACGGCGTG
CTTCGCCAGCTCCCCCGGCAACACCAATCTCACGGCGGTCTGGATCTCGCGAGAAGTGATGGTCGGTTTCTTGTTGTAGCGCGCGAGACGCGACGCCTCC
TGCGCCAATTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATTCCCATGGCCTTGCTCGAGATCCCGATGTCAGGGTGGACCTGTTTCAGCACCTTGA
AGATGTAGATCTTGTAGGTCTCCGTGCTCTTCTTTATCCGCTTCTTCTTTTTGTCTCCGGCAGCAGCGCCGCCTTCCTTCGGCAACTTCTTACCGGCCTT
GGGCTTCTTCTCCGCCGGAGCCTTCTCGGCGGCGGGCTTCTTCTCCGCTGGTTTCTTCTCTGCTTTTGGTGCCATTTGCTGCTGCTCGGTTTGAGGTAGC
GGAAAGTGAATACTCTGTGAGGATCTCTCGACGTGAGGAATTGTAACTCGAGGTGGACTTTATATAGAATACTGGGATGAGTTGTTA