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Detailed information on CNT3061469


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96502|COL2_ARATH, E-value = 5e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377462Arabidopsis lyrataArabidopsis thaliana49.386.4897.5200forward

Expression of CNT3061469

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MARSKTIGSMNLSITAGAQVGRISPAVHGTGG*

>peptide 2 (87 aa)
TSLFSGSVTVVSHEWLCIEMQHLPCRKRQPGLAHMIDRLEHVHGEKQDDWQHELEHHSWCTGRQNQPGSTRYRRLIGMYHRELRRLY*

Sequence

>CNT3061469
CACCAGTCTGTTCTCTGGATCTGTCACTGTTGTCTCACATGAATGGTTGTGCATAGAGATGCAGCATCTGCCTTGCAGAAAAAGGCAGCCGGGGCTCGCT
CACATGATTGACAGACTCGAACACGTTCATGGCGAGAAGCAAGACGATTGGCAGCATGAACTTGAGCATCACAGCTGGTGCACAGGTAGGCAGAATCAGC
CCGGCAGTACACGGTACAGGCGGCTGATCGGCATGTATCACAGGGAACTAAGAAGGTTATATTAGTTGTGGAAGGATAGAATCCTGAGATCTGGACACGT
GGCGAGAAGTTTGTGGCTTTGAAAAGTCGTTTGATCACCTTGTGGCTGGCTGAGTTTCTGAGAAGGGGGTCCAGTGCAGAGAAGCTTACAGCTTTTGAAA
TCATC