Detailed information on CNT30613944


BLAST search results

BLAST vs Swiss-Prot:
sp|Q681K7|GEX1_ARATH, E-value = 2e-163

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378424Arabis alpinaArabidopsis thaliana16.3941.9587.6250forward

Expression of CNT30613944

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MILNLQLSTCLPSSLDLPLAPTVILQCSVALGRFLWFVETLHSYEFLWCL*

>peptide 2 (44 aa)
MTPATKVIMIKSITQSKVKKLEEIQTESYCNCWQMVLVSSMNSR*

>peptide 3 (30 aa)
MHLPNNCLDLQACFWRLQGLELPSRYQKLP*

>peptide 4 (41 aa)
MKKALITLDSRSIALCKAKSLSRATNMLACFASNASCKTDS*

>peptide 5 (57 aa)
MNLLKLFLPLCKIFLLFLTKIRQTLQVAPTKLQQKKRCLTLKLGKKLKIVKSCRLPV*

Sequence

>CNT30613944
ATCCGGTGGTTGAGTACTTCATAGTCCCTGCATTTCCAGTCAAGAGTATAAATTAGCTTCTGAGTTTTGGTTTGTCCAAAGATATCCATTTTTGCATTTG
ATCATTTACCTGTATGTAAAAGCAGCGTGAAGAAGCTGAGCTGAAGCAAGAACAGCAAATAAAGACCTGACAACGTTTATAATCCATGCTCGGTGTTCTG
CATCATTCACGAAACGCAAACTTGCCACTTCAAAAGCTAAGATGACAAAGATCGACAAGAAGTAGATGAAGAAAGCTTTGATCACCCTGGACTCAAGAAG
CATTGCATTGTGCAAAGCAAAGAGCTTATCCAGAGCTACAAACATGCTTGCTTGTTTCGCCTCAAACGCTTCCTGCAAAACAGATAGTTAAGTACTTAGT
TTTATGTGATCTTGCTTCTAATGTTTTTGAAATTTGTGAAGGTTTGGGTGACTGACCTGAGCTTCCAACATTGATTTTGAATTTTCAAACAAGTGATCAT
GAACCTGTTGAAGCTGTTCTTGCCGCTTTGCAAGATTTTCCTGTTGTTCCTGACTAAAATCCGCCAAACGCTTCAAGTTGCTCCTACAAAGTTGCAGCAA
AAAAAACGGTGCCTCACTCTGAAACTGGGTAAGAAACTGAAGATTGTCAAGAGCTGCCGATTGCCCGTCTAAAAGCTTCTGCTGTTTATCCAGTGAACTA
CCAGTCATAGTTCCAATGATATCGGTTTTATTCTCCAAATCATTCATTTTGGATGATATTGAATCTCCAACTTTCAACGTGTCTCCCATCTTCTCTTGAC
CTTCCCTTAGCACCAACTGTGATTCTGCAATGTTCTGTTGCTCTTGGTAGATTTCTTTGGTTTGTTGAGACACTCCACTCATATGAGTTTCTATGGTGTT
TGTAATCATAGCCACGTTCTGAACCTGAACATCTATTGACCCTAAAGATTCATGAATCATGCTCGAACTCTGCAATAGAACATCAGATTTACTCTCCAAG
ACATCCAGTTTGTCTTCTGTATCTTGAGCTGACCTCCTCAGATCATTCACAAGCCTCTCTATTTCATTTTTAAATGCATGACTCCTGCCACAAAAGTAAT
CATGATCAAGTCAATTACGCAATCAAAAGTAAAAAAGCTTGAAGAAATACAGACAGAATCGTACTGTAATTGTTGGCAGATGGTGTTGGTTTCAAGCATG
AATTCGAGATAGATCTTATGCTCATGATCATCTAGCTTCTTGAGGCAAGTCATCATTGGTGATTCATCATTGCAGGTAGGAAAAGCCGGTCTTCCCGAGT
CTTTGAGGAAGCAATCACTCAAATACCAAGCGAATCTCTTCCTCTTTTCTTCTGTGGCAACAGTTTCCTTGCAGCCAGTGAAGAGGTAAGTATATGCATT
TACCCAACAACTGTTTGGACCTACAAGCTTGTTTCTGGCGTCTCCAAGGACTTGAACTGCCCTCTCGTTACCAAAAACTTCCATAGAGAAGTCAGGATTG
GATTTGTGAGACCGAGGGAAAGAAG