CANTATAdb - search

Detailed information on CNT30612239

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674978	Arabis alpina	Setaria viridis	9.44	33.33	86.29	248	forward
CNT30512774	Arabis alpina	Juglans regia	34.77	73.16	82.37	913	forward
CNT3019595	Arabis alpina	Citrullus lanatus	18.05	85.41	79.96	474	forward
CNT30728649	Arabis alpina	Corchorus capsularis	16.98	40.96	85.65	446	forward
CNT30405829	Arabis alpina	Beta vulgaris	17.9	56.9	85.53	470	forward
CNT30224330	Arabis alpina	Hordeum vulgare	18.39	100	82.82	483	forward
CNT30510528	Arabis alpina	Solanum lycopersicum	48.78	99.46	82.12	1281	forward
CNT30665536	Arabis alpina	Triticum dicoccoides	24.75	98.63	84	650	forward
CNT30309902	Arabis alpina	Camelina sativa	43.11	99.82	89.58	1132	forward
CNT30445994	Arabis alpina	Saccharum spontaneum	53.66	98.95	81.83	1409	forward
CNT30716232	Arabis alpina	Malus domestica golden	50.5	100	84.24	1326	forward
CNT30479087	Arabis alpina	Arabidopsis halleri	8.07	72.85	85.85	212	forward
CNT30705326	Arabis alpina	Prunus avium	35.72	73	82.62	938	forward
CNT3024028	Arabis alpina	Populus trichocarpa	14.62	51.96	83.33	384	forward

Expression of CNT30612239

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MYKRLCLLGDLLITVRIDRSRTVSRNETTGSDLMISAPPMKSS*

>peptide 2 (55 aa)
MTVLWTLLTYRSFFSPGTKLGPMILTFIPVDTLPANTRPKAKNLPLSEAGIILET*

>peptide 3 (35 aa)
MCSPDSSIVHTTIGSDLANLLSPSTSLGRSEATLH*

>peptide 4 (45 aa)
MEPRVRENKEFVLVVMKSLQLVFELGQWSHLFLQTLPLPDISNQH*

Sequence

>CNT30612239
CAAAAACAGTGATAATAAAAGTTCTCAACTAAAAGTAAAACATTCAGAGGGGATGGCCAAAGATAAAGTCATCAATCCATCATAGTACCAAAACAGTAAA
CTTAAAACAAAAGACTGACAAAAATAAGGTAGTAGCGAGAGAGAGTAATATCCAGCAAAATGGAACCAAGAGTAAGAGAGAACAAAGAGTTTGTCTTGGT
GGTGATGAAGAGCTTACAGCTTGTCTTCGAACTCGGACAATGGAGTCATCTGTTCCTTCAAACCCTTCCTCTTCCTGATATCAGCAACCAACACTGAAGC
TTGAGTACCTGGCTCCAGAGGGTCGGATCCCATCATCTCCCAGTGATCAAACACACACTGTGGGAAGGCCTGTCCAGATGTTGCAGCCCTAAGCTGACTT
GAGAAACCAAAAGACTCCACGACTGGCAAGTATGCCTTGATGTTGTACAAGGGTGTTCCTTGCCTCTGCATCTCCTCAAAGACGTGACCACGCTTCTGAT
TCAGCACACTGTAAATACCTCCAAGAGCTCCCTCTGGTGCTTGGATCTCAACCATGTAAATAGGCTCCATAAGTCTGGGCTTGGCAGTGATCTGGGAAGC
GTAGATGACCCTTCTAGCAGTGGGAATAACTTGACCACCACCTCTGTGGATAGCATCAGAATGGAGAACCACATCGCACACCTCGAAACAGATACCTCTC
ATGTTCTCTTCTCCTAGAGGACCTTCCTTGGACGCCCACTGGAAACCAGCAACAACTGAATCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGT
CAACCACCATGTTAGGTCCGGTGGTTTCAGGTCCTTGTCCCATCCAAATTCCTCAGCCAAGATCTTGGATCTGATTTTGGGGTCATCTCTTGGGCCAATA
CGTCCATCATCAATTGCCTCAGCAAGACCTTCCTCCATTGGTCTGGCCTCCATGTACAAACGGTTATGCTTGTTGGGGGACTTGCTCATCACAGTGCGGA
TAGATCGCTCAAGGACAGTCTCACGGAATGAGACAACAGGGTCAGACTTGATGATCTCAGCACCACCCATGAAATCATCCTGAAGATCCTTCAAACAGAT
CTCAAGATGTAATTCTCCAGCACCAGCAACAATGTGTTCACCTGATTCTTCCATTGTGCACACAACCATAGGGTCAGACTTGGCCAACCTCTTGAGTCCC
TCAACCAGCTTGGGAAGGTCAGAAGCAACCTTGCACTGAACAGCAACACGCACAACAGGGGACACAGAGAACTTCATGGCACGAATAGGGTGGGCATCAA
CTTCTTTCTCGTTAGTCAGAGTTGCGTTTTTGGTGATGTACTGATCCAGACCAACCATAGCGACAGTGTTACCACAGGGAACATCTTCAACAGTCTCCTG
CCTCTTTCCCATCCAGATGACGGTTCTCTGGACACTCTTGACATACAGATCCTTCTTCTCACCAGGGACAAAGTTGGGACCCATGATCCTGACCTTCATA
CCAGTGGACACCTTACCAGCAAACACACGACCAAAAGCAAAGAATCTACCCTTGTCAGAGGCTGGAATCATCTTGGAAACGTAAAGCATGAGAGGACCAT
TAGGATCACAGTTCCTGATGGCATTGGCATACTGATCATCGAGGGGACCTTCATACAGATTCTCAACACGGTACCTCTGAGCAGTGTGGGGAGATGGAAG
GTGAAAGATCATCATCTCAAGTAGTGCGGTACTTGCAGGCAACCAGGTCTGCATGACACGCTTCATCAAAGGTTTACCCATCAGCTCCTTCTCATCATTC
TTCATCTGAACACCTAGCTTAGCAAGCATAGGCCACAACTTGTCTTTCTGGTCATTCATGCAAGTGGCAATGATCTGCTTGATTGGCTCATAACAGAACT
GAACAAACCCACGCTTGCAGGTCGCGGTACCAGTGTTCTTGCTGCTCCATTTCCTGGTAGCAGGGTCAAAGAAGTTCTCACCCCAAAGCCTCTCCATCAT
CTTAGTTTCGTCAACACCGAACTTGGAAGCGTACATCTTAGCAAAGTTGGTCAGGGTGAAGGCCCATCCGTGAAGACCAGCAGAGAAAGCCACAGTTCCC
TTCTCTGGGTAGACCTGAACATCCCCAAGAAGAGGATCCTCGTAAGTGGCCATGATGACGTTAGCGTTCTCAATGACCCTCTGGAAAGTCTGGTAAGCCT
CCTCACCATCAACCTGAAGCTCAAGGAAACACCTGTCCATCTTGTTAACAGTCAAGACTGGCCTAATCCTCTCACCAAGGGCCTGACGCAACACTGTCTC
GGTCTGGACACAGACACCCTCAATACAATCCACCACCACAAGAGCACCATCAGTAATACGGAGAGCAGCAGTAACCTCAGAAGAAAAGTCAACGTGCCCA
GGGGAATCAATCAGATTGATAAGGTATTCGTTACCGTCCCTAGCACCAGTGAAACTCTTCAAGGACTCATCAGTCATCTCATAATAGAGAGAAATACCGG
TTGACTTAATTGTAATACCACGTTCTGCTTCATCAGCACGAGTATCAGTCATACGCACATCACCAGCAACCTCTTGTGCAATGATACCAGCAGCAGCAAC
CAAAGAGTCAGTAAGAGTTGATTTCC