Detailed information on CNT30611008


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUI5|PSAK_ARATH, E-value = 6e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671922Arabis alpinaSetaria viridis25.6618.8486.7668forward
CNT30520562Arabis alpinaSetaria italica67.9240.1880.56180forward
CNT30289849Arabis alpinaTriticum aestivum52.8334.3180140forward
CNT30242614Arabis alpinaAvena sativa52.8339.2280.71140forward
CNT30659915Arabis alpinaTriticum dicoccoides52.8338.5780140forward
CNT3059741Arabis alpinaArabidopsis lyrata76.663.6489.66203forward
CNT30624058Arabis alpinaDaucus carota73.9654.1479.08196forward
CNT30339854Arabis alpinaEragrostis tef25.6618.4885.2968reverse complement
CNT30102685Arabis alpinaOryza rufipogon76.638.5981.77203forward
CNT30581501Arabis alpinaEchinochloa crusgalli53.5831.9880.99142forward

Expression of CNT30611008

Peptides detected in this lncRNA

>peptide 1 (51 aa)
STKDQRERERYNILNSTNVLEAKDNSDADDMTDGTTSQRVGECEPGRVTCL*

Sequence

>CNT30611008
TTCCACAAAGGATCAAAGAGAGAGAGAGAGATATAACATTTTAAATAGCACCAATGTTCTTGAGGCCAAGGACAACTCCGACGCCGATGATATGACCGAC
GGTACCACAAGCCAACGTGTCGGCGAGTGTGAACCCGGCCGGGTCACCTGTTTGTAGACCCGAGTCACGTGCCTCTAGCTTAAGTCCAGCTGTCGCTTTC
CTATTGGCTGATGGTGCCAGTCCGAATCTCCCCGCGAACAACATCAGAGTCGTCGACGTTACCAT