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Detailed information on CNT30610418


BLAST search results

BLAST vs Swiss-Prot:
sp|O22582|H2B_GOSHI, E-value = 6e-56

BLAST vs NONCODE:
NONGMAT000269, E-value = 4e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375451Gossypium raimondiiArabidopsis thaliana5.7222.0989.0955forward
CNT30618877Gossypium raimondiiSesamum indicum31.738.7584.26305forward
CNT30526608Gossypium raimondiiPhaseolus vulgaris37.2144.2581.28358forward
CNT30632073Gossypium raimondiiVigna unguiculata27.9635.7783.64269forward
CNT30194796Gossypium raimondiiPisum sativum32.1242.3985.76309forward
CNT30163372Gossypium raimondiiPistacia vera29.8349.8382.58287forward
CNT30396147Gossypium raimondiiTriticum turgidum11.8520.8481.58114forward
CNT30510004Gossypium raimondiiSolanum lycopersicum12.5839.6785.12121forward
CNT30172842Gossypium raimondiiTrifolium pratense34.6260.1183.78333forward
CNT30131583Gossypium raimondiiLolium perenne24.8456.3778.66239forward
CNT30205622Gossypium raimondiiHelianthus annuus26.7295.1982.1257forward
CNT30429187Gossypium raimondiiPapaver somniferum20.4818.9185.79197forward
CNT3024639Gossypium raimondiiPopulus trichocarpa27.3463.8384.03263forward
CNT30174435Gossypium raimondiiVigna angularis36.3852.2482.86350forward
CNT30114697Gossypium raimondiiEutrema salsugineum37.7359.2283.47363forward

Expression of CNT30610418

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNLFKDLEDVDLVGFGTLLGPLLLFVSGSCSAFLR*

>peptide 2 (71 aa)
MEPLINEQQSKFTAIAKQRNISIPEHRQKDTLSFHCSNNFKTISKKELHTSTEFQKGTSIKNAKPKIPKFH*

Sequence

>CNT30610418
ATGGAACCATTAATAAACGAGCAACAAAGCAAATTTACAGCCATAGCTAAACAAAGAAACATTTCGATTCCTGAACATAGACAAAAGGATACACTTTCAT
TTCATTGTTCCAACAATTTTAAAACCATAAGTAAAAAGGAGTTACATACATCAACGGAATTTCAAAAAGGAACCTCCATAAAAAACGCTAAACCTAAAAT
CCCCAAATTTCATTAAATTCAAGAGCTAGTAAACTTAGTCACCGCCTTGGTACCTTCAGAGACGGCGTGTTTCGCAAGTTCACCGGGAAGAACGAGCCTA
ACGGCGGTCTGAATTTCCCTTGAAGTAATCGTGGGCTTCTTGTTGTACCTCGCGAGCCTCGAAGCTTCTTGAGCAAGTTTCTCAAAGATATCGTTAATGA
AACTGTTCATTATCCCCATAGCCTTGCTTGAGATCCCGATATCAGGGTGAACTTGTTTAAGAACCTTGAAGATGTAGATCTTATAAGTCTCCACACTCTT
CTTGGCCCTCTTCTTCTTCTTATCACCGGCGGCACCGCCTTCTTTTGGAAGCTTCTTGCCGGCCTTCGGTTTCTTGTTGTACCTCGCGAGTCTCGAAGCT
TCTTGAGCAAGTTTCTCAAAGATGTCATTGATGAAACTGTTCATAATGCCCATAGCTTTGCTTGAGATACCGATATCTGGATGAACTTGTTTAAGGACCT
TGAAGATGTAGATCTTGTAGGTTTCGGTACTCTTCTTGGTCCTCTTCTTCTTTTTGTCTCCGGCAGCTGCTCCGCCTTCCTTCGGTAGCTTTTTACCGGC
CTTTGGCTTCTTCTCCGCCGGAGCTTTCTCAGCTACTGTTTTCTTCTCCTCCGCTGGTTTCTTCTCTGCTGGCTTTTTCTCGGCTTTTGGTGCCATTTCC
TAGGGTTCGTTTGGGGTTTAGGAGAAAATAGAGTTTTGAAAACTGAATTTGAAGAGTTCGTG